BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0225600 Os03g0225600|AK058500
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31780.1  | chr1:11391341-11394610 FORWARD LENGTH=681          139   4e-34

>AT1G31780.1 | chr1:11391341-11394610 FORWARD LENGTH=681
          Length = 680

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 87/114 (76%), Gaps = 6/114 (5%)

Query: 1   GLSNKMPYIKDYSSTGSKDDARPLADIVETSPQMLLECLKAFYGLVTGTEGSLPEFEQLQ 60
           GLS+KM   +  +S        PL++  +TSP ML ECLKAF+GLV G+EGSLPEFEQ+Q
Sbjct: 573 GLSDKMQIFRSSTSE------LPLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQ 626

Query: 61  VPRLRSDACYGLARALAEAYELIYKAVVDPKNCYPDPRSLVKHSPEQIRTILEI 114
           VP+LRS+AC  +A+ LAEAYE+IY+AV D +N YPDP+SL +H P+QIRTIL I
Sbjct: 627 VPKLRSEACVRVAKTLAEAYEVIYQAVTDQQNGYPDPKSLARHPPDQIRTILGI 680



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,572,154
Number of extensions: 93604
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)