BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0223900 Os03g0223900|AK066490
(321 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24880.1 | chr1:8776028-8783586 FORWARD LENGTH=370 323 6e-89
AT1G25054.1 | chr1:8798556-8806115 FORWARD LENGTH=370 323 6e-89
AT1G25210.1 | chr1:8833018-8834871 FORWARD LENGTH=372 323 8e-89
AT1G25145.1 | chr1:8818867-8820493 FORWARD LENGTH=327 323 8e-89
AT1G24793.1 | chr1:8767581-8769207 FORWARD LENGTH=327 323 8e-89
>AT1G24880.1 | chr1:8776028-8783586 FORWARD LENGTH=370
Length = 369
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 211/307 (68%), Gaps = 10/307 (3%)
Query: 7 RALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRYFVVEGE 66
R ++ S S P+G QQTLA +V G LHSG +T L P AG GR+F
Sbjct: 63 RYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSR 122
Query: 67 ETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEV---SGGD--- 120
+ E A SPLCT L + ++RTVEHLLSA+EA GVDNCR+++ S D
Sbjct: 123 FIPASIEFAQ---ESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREV 179
Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
E+P+ DGSA+EWV AI+G G AA++ G+ +EK+ +++PVY+ K+D F+AA P+
Sbjct: 180 EVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALET 239
Query: 181 RITYGIDFPKVPGIGCQRFA-TVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLE 239
RIT GIDFP+VP IGCQ F+ + + ++ IA +RTFC++EEVE++R AGLI+GGSL+
Sbjct: 240 RITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLD 299
Query: 240 NATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALH 299
NA VCS GW+NPPLRF+DE CRHKILDLIGD SL+++ GN G P+AH+VAYKAGHALH
Sbjct: 300 NAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALH 359
Query: 300 TDFLRHL 306
TD RHL
Sbjct: 360 TDLARHL 366
>AT1G25054.1 | chr1:8798556-8806115 FORWARD LENGTH=370
Length = 369
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 211/307 (68%), Gaps = 10/307 (3%)
Query: 7 RALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRYFVVEGE 66
R ++ S S P+G QQTLA +V G LHSG +T L P AG GR+F
Sbjct: 63 RYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSR 122
Query: 67 ETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEV---SGGD--- 120
+ E A SPLCT L + ++RTVEHLLSA+EA GVDNCR+++ S D
Sbjct: 123 FIPASIEFAQ---ESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREV 179
Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
E+P+ DGSA+EWV AI+G G AA++ G+ +EK+ +++PVY+ K+D F+AA P+
Sbjct: 180 EVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALET 239
Query: 181 RITYGIDFPKVPGIGCQRFA-TVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLE 239
RIT GIDFP+VP IGCQ F+ + + ++ IA +RTFC++EEVE++R AGLI+GGSL+
Sbjct: 240 RITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLD 299
Query: 240 NATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALH 299
NA VCS GW+NPPLRF+DE CRHKILDLIGD SL+++ GN G P+AH+VAYKAGHALH
Sbjct: 300 NAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALH 359
Query: 300 TDFLRHL 306
TD RHL
Sbjct: 360 TDLARHL 366
>AT1G25210.1 | chr1:8833018-8834871 FORWARD LENGTH=372
Length = 371
Score = 323 bits (828), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 211/307 (68%), Gaps = 10/307 (3%)
Query: 7 RALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRYFVVEGE 66
R ++ S S P+G QQTLA +V G LHSG +T L P AG GR+F
Sbjct: 65 RYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSR 124
Query: 67 ETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEV---SGGD--- 120
+ E A SPLCT L + ++RTVEHLLSA+EA GVDNCR+++ S D
Sbjct: 125 FIPASIEFAQ---ESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREV 181
Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
E+P+ DGSA+EWV AI+G G AA++ G+ +EK+ +++PVY+ K+D F+AA P+
Sbjct: 182 EVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALET 241
Query: 181 RITYGIDFPKVPGIGCQRFA-TVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLE 239
RIT GIDFP+VP IGCQ F+ + + ++ IA +RTFC++EEVE++R AGLI+GGSL+
Sbjct: 242 RITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLD 301
Query: 240 NATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALH 299
NA VCS GW+NPPLRF+DE CRHKILDLIGD SL+++ GN G P+AH+VAYKAGHALH
Sbjct: 302 NAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALH 361
Query: 300 TDFLRHL 306
TD RHL
Sbjct: 362 TDLARHL 368
>AT1G25145.1 | chr1:8818867-8820493 FORWARD LENGTH=327
Length = 326
Score = 323 bits (828), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 211/307 (68%), Gaps = 10/307 (3%)
Query: 7 RALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRYFVVEGE 66
R ++ S S P+G QQTLA +V G LHSG +T L P AG GR+F
Sbjct: 20 RYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSR 79
Query: 67 ETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEV---SGGD--- 120
+ E A SPLCT L + ++RTVEHLLSA+EA GVDNCR+++ S D
Sbjct: 80 FIPASIEFAQ---ESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREV 136
Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
E+P+ DGSA+EWV AI+G G AA++ G+ +EK+ +++PVY+ K+D F+AA P+
Sbjct: 137 EVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALET 196
Query: 181 RITYGIDFPKVPGIGCQRFA-TVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLE 239
RIT GIDFP+VP IGCQ F+ + + ++ IA +RTFC++EEVE++R AGLI+GGSL+
Sbjct: 197 RITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLD 256
Query: 240 NATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALH 299
NA VCS GW+NPPLRF+DE CRHKILDLIGD SL+++ GN G P+AH+VAYKAGHALH
Sbjct: 257 NAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALH 316
Query: 300 TDFLRHL 306
TD RHL
Sbjct: 317 TDLARHL 323
>AT1G24793.1 | chr1:8767581-8769207 FORWARD LENGTH=327
Length = 326
Score = 323 bits (828), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 211/307 (68%), Gaps = 10/307 (3%)
Query: 7 RALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRYFVVEGE 66
R ++ S S P+G QQTLA +V G LHSG +T L P AG GR+F
Sbjct: 20 RYSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSR 79
Query: 67 ETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEV---SGGD--- 120
+ E A SPLCT L + ++RTVEHLLSA+EA GVDNCR+++ S D
Sbjct: 80 FIPASIEFAQ---ESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREV 136
Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
E+P+ DGSA+EWV AI+G G AA++ G+ +EK+ +++PVY+ K+D F+AA P+
Sbjct: 137 EVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALET 196
Query: 181 RITYGIDFPKVPGIGCQRFA-TVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLE 239
RIT GIDFP+VP IGCQ F+ + + ++ IA +RTFC++EEVE++R AGLI+GGSL+
Sbjct: 197 RITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLD 256
Query: 240 NATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALH 299
NA VCS GW+NPPLRF+DE CRHKILDLIGD SL+++ GN G P+AH+VAYKAGHALH
Sbjct: 257 NAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALH 316
Query: 300 TDFLRHL 306
TD RHL
Sbjct: 317 TDLARHL 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,872,978
Number of extensions: 289659
Number of successful extensions: 545
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 5
Length of query: 321
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,392,385
Effective search space: 1863109470
Effective search space used: 1863109470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)