BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0222600 Os03g0222600|J075095E18
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237 114 1e-26
AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221 96 6e-21
AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244 95 9e-21
AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246 93 4e-20
AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211 54 2e-08
AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193 49 8e-07
AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196 48 2e-06
>AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237
Length = 236
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 47 LETVAPHAAVTGERKLNPNLQEQLPKPYLARALAAVDPSHPQGTRGRDARGMSVLQQHAA 106
L T AP A VT +RK+ +L+E LPKPY+ARALAA D HP GT G D++GMSV+QQH A
Sbjct: 8 LATTAPLAPVTSQRKVRNDLEETLPKPYMARALAAPDTEHPNGTEGHDSKGMSVMQQHVA 67
Query: 107 FFDRNGDGIIYPWETFQG 124
FFD+N DGI+YPWET++G
Sbjct: 68 FFDQNDDGIVYPWETYKG 85
>AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221
Length = 220
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%)
Query: 47 LETVAPHAAVTGERKLNPNLQEQLPKPYLARALAAVDPSHPQGTRGRDARGMSVLQQHAA 106
+ TVA A VT ER++ +L ++LPKPY+ RA+ A D + GTRG R MSVLQQH A
Sbjct: 11 IATVAEKAPVTAERRVRTDLDDRLPKPYVPRAMVAPDMENVNGTRGHKHRDMSVLQQHIA 70
Query: 107 FFDRNGDGIIYPWETFQG 124
FFD++GDGIIYP ETF+G
Sbjct: 71 FFDQDGDGIIYPSETFRG 88
>AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244
Length = 243
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 47 LETVAPHAAVTGERKLNPNLQEQLPKPYLARALAAVDPSHPQGTRGRDARGMSVLQQHAA 106
+ETVAP+A VT R++ +L + LPKPYL RAL A D HPQGT G+SVLQQH A
Sbjct: 12 METVAPYARVTYHRRVRGDLDDTLPKPYLPRALQAPDMEHPQGTPDHRHNGLSVLQQHVA 71
Query: 107 FFDRNGDGIIYPWETFQG 124
FFD + +GIIYP+ETF G
Sbjct: 72 FFDLDNNGIIYPFETFSG 89
>AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246
Length = 245
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 47 LETVAPHAAVTGERKLNPNLQEQLPKPYLARALAAVDPSHPQGTRGRDARGMSVLQQHAA 106
+ TVAP+A VT R+ +L ++LPKPY+ RAL A D HP GT G G+SVLQQH +
Sbjct: 13 MATVAPYAPVTYHRRARVDLDDRLPKPYMPRALQAPDREHPYGTPGHKNYGLSVLQQHVS 72
Query: 107 FFDRNGDGIIYPWETFQG 124
FFD + +GIIYPWET+ G
Sbjct: 73 FFDIDDNGIIYPWETYSG 90
>AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211
Length = 210
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 78 ALAAVDPSHPQGTRGR-DARGMSVLQQHAAFFDRNGDGIIYPWETFQG 124
ALA+ S P+ RG+ D M+ L++H +FFDRN DG +YPWET+QG
Sbjct: 7 ALASKAKS-PKPKRGKLDKEKMTALEKHVSFFDRNKDGTVYPWETYQG 53
>AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193
Length = 192
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 99 SVLQQHAAFFDRNGDGIIYPWETFQG 124
+ LQ+H AFFDRN DGI+YP ETFQG
Sbjct: 18 NFLQKHVAFFDRNKDGIVYPSETFQG 43
>AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196
Length = 195
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 99 SVLQQHAAFFDRNGDGIIYPWETFQG 124
+ LQ+H AFFDRN DGI+YP ETFQG
Sbjct: 17 NFLQRHVAFFDRNKDGIVYPSETFQG 42
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,354,860
Number of extensions: 73025
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 7
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)