BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0214200 Os03g0214200|AK100623
(401 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13740.1 | chr1:4713969-4715158 FORWARD LENGTH=349 146 2e-35
AT3G29575.1 | chr3:11382416-11383657 REVERSE LENGTH=232 124 1e-28
AT1G69260.1 | chr1:26039314-26040570 FORWARD LENGTH=346 112 4e-25
AT3G02140.1 | chr3:385478-386437 REVERSE LENGTH=320 93 3e-19
AT3G07250.1 | chr3:2300579-2308305 REVERSE LENGTH=1295 86 4e-17
AT4G28910.2 | chr4:14264330-14265680 REVERSE LENGTH=426 55 5e-08
>AT1G13740.1 | chr1:4713969-4715158 FORWARD LENGTH=349
Length = 348
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 133/258 (51%), Gaps = 20/258 (7%)
Query: 140 NMTDTLMRTSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIERRNSLTSNISKEAVGQILEE 199
N T L RT+SLPA +E+EWRKRKE QSL+R+E KR+R E+++ N + V E
Sbjct: 102 NYTVGLERTTSLPAEMEEEWRKRKEMQSLRRMEAKRRRCEKQSFRVGNSDDQTVSFENER 161
Query: 200 MNAGAEKVESCDDVATGNKKTGGNVNH--SSDRNRCTGLPPVHRATYTQQRGSLSGIPTK 257
+ K+G H SS+R C AT SLS + K
Sbjct: 162 WVTAS--------------KSGFLQRHLVSSNRQVCGVDSDGGGATGGGSSSSLSELDNK 207
Query: 258 HIPAMKGSADAEEHNVPSAATEHRNGAAIATPPFXXXXXXXXXXXXXGEQLRATGRVAAR 317
+ S + E A +G+ P +++R+ V +
Sbjct: 208 NQQGSSNSCNDERSPKIVAGCSSNSGSQGTERP-SVTRANKVNENENEKRVRSEDSVDRK 266
Query: 318 AKSMGDVERIMMQEMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFV 376
K M ++ +MPCV TKG PNG+RV+G LYKY KGEEVRI+C+CHGSFLTPAEFV
Sbjct: 267 GKGMATSTGLV--DMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFV 324
Query: 377 KHAGGGDVANPLRHIVVN 394
KH GGGDV PLRHIVVN
Sbjct: 325 KHGGGGDVDRPLRHIVVN 342
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 1 MEGFSRDLLCGIGKGGDGPR----GEVRPRVDMEAEEVELNLGLSLGGRFGLDRRGEKLA 56
++ + RDLL G G R GE D E+ +ELNLGLSLGGRFG+D+ KL
Sbjct: 25 IDKYPRDLLRGFMSENGGGRVFHGGETN--CDDEST-IELNLGLSLGGRFGVDKTPRKLK 81
Query: 57 RSSSVAAIL----AAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDEL 101
RSSSV + + EP GL RT+SLP E K++ + L
Sbjct: 82 RSSSVLDTVPFNDSTVAEPENYTVGLERTTSLPAEMEEEWRKRKEMQSL 130
>AT3G29575.1 | chr3:11382416-11383657 REVERSE LENGTH=232
Length = 231
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 328 MMQEMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFVKHAGGGDVAN 386
++++MP V T G PNGK++ GFLY+YRKGEEVRIVCVCHGSFL+PAEFVKHAGGGDVA+
Sbjct: 159 IIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAH 218
Query: 387 PLRHIVVNPIP 397
PL+HIVVNP P
Sbjct: 219 PLKHIVVNPSP 229
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 137 LEVNMTDTLMRTSSLPAGIEDEWRKRKEAQSLKRLEVKRKRIERR 181
L VN L RT SLP E+EWRKRKE QSL+RLE KRKR E++
Sbjct: 47 LVVNDRSGLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQ 91
>AT1G69260.1 | chr1:26039314-26040570 FORWARD LENGTH=346
Length = 345
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 331 EMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFVKHAGGGDVANPLR 389
EMPCV TKG PNGKRV+G LY+Y GEEVRI+CVCHG FL+PA+FVKHAGG V +PLR
Sbjct: 273 EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHVDHPLR 332
Query: 390 HIVVNPIPPS 399
HIVVN PS
Sbjct: 333 HIVVNTSSPS 342
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 64/147 (43%), Gaps = 47/147 (31%)
Query: 34 VELNLGLSLGGRFGLDRRGEKLARSSSVAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAA 93
+ELNLGLSLGGRFG+D+ KL RSSSV + LFR AAA
Sbjct: 46 IELNLGLSLGGRFGVDK-SNKLVRSSSVVVTMP-----------LFREDHHHHQAAAMIT 93
Query: 94 KKQGVDELNCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVNMTDTLMRTSSLPA 153
K + + LMRT+SLPA
Sbjct: 94 TKVSTETVAG-----------------------------------ATRGTGLMRTTSLPA 118
Query: 154 GIEDEWRKRKEAQSLKRLEVKRKRIER 180
E+EWRKRKE Q+L+R+ KR+R E+
Sbjct: 119 ESEEEWRKRKEMQTLRRMAAKRRRSEK 145
>AT3G02140.1 | chr3:385478-386437 REVERSE LENGTH=320
Length = 319
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 10/78 (12%)
Query: 326 RIMMQEMPCVCTKGL-PNGKRVEGFLYKYR-KGEEVRIVCVCHGSFLTPAEFVKHAG--- 380
R ++++MPCV T+ + +GKRVEGFLY Y EEV+IVCVCHGSFL+PAEFV+H G
Sbjct: 235 RNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHGGGTV 294
Query: 381 ----GGDVA-NPLRHIVV 393
GGDV NPLRHIVV
Sbjct: 295 SDDDGGDVMINPLRHIVV 312
>AT3G07250.1 | chr3:2300579-2308305 REVERSE LENGTH=1295
Length = 1294
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 320 SMGDVERIMMQEMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFVKH 378
S G+ + +MPCV + G P GK V GFLY+Y K E + I+CVCHG+ +PAEF+ H
Sbjct: 208 SNGNGSLLPFAQMPCVTSTGNGPEGKTVNGFLYRYSKSE-ISIICVCHGTSFSPAEFIVH 266
Query: 379 AGGGDVANPLRHIVV 393
AGG +V++PLRHI V
Sbjct: 267 AGGTNVSHPLRHITV 281
>AT4G28910.2 | chr4:14264330-14265680 REVERSE LENGTH=426
Length = 425
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 332 MPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFVKHA 379
+P V T G P+G+ + G Y+Y +++IVC CHGS ++P EFV+HA
Sbjct: 358 LPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHA 405
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,997,869
Number of extensions: 316651
Number of successful extensions: 776
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 9
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)