BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0210200 Os03g0210200|AK111138
(113 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47550.1 | chr5:19286596-19286964 REVERSE LENGTH=123 81 9e-17
AT4G16500.1 | chr4:9301530-9301883 REVERSE LENGTH=118 70 2e-13
AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102 53 4e-08
AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126 46 5e-06
>AT5G47550.1 | chr5:19286596-19286964 REVERSE LENGTH=123
Length = 122
Score = 81.3 bits (199), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 22 GWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASG 81
GWSPI N+ DP + E+G +A++E N+ S S L F V GE QVVSG NYRL++ A G
Sbjct: 30 GWSPISNVTDPQVVEIGEFAVSEYNKRSESG-LKFETVVSGETQVVSGTNYRLKVAANDG 88
Query: 82 GGDVTGSYGAVVFEQEWSNTRKLISFDKNHN 112
G V+ +Y A+V+++ W R L SF+ +N
Sbjct: 89 DG-VSKNYLAIVWDKPWMKFRNLTSFEPANN 118
>AT4G16500.1 | chr4:9301530-9301883 REVERSE LENGTH=118
Length = 117
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 25 PIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGD 84
PIKN+ DP + + ++AI E+N+ S ++L F +V G QVVSG Y L+I A GGG
Sbjct: 34 PIKNVSDPDVVAVAKYAIEEHNKES-KEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGK 92
Query: 85 VTGSYGAVVFEQEWSNTRKLISF 107
+ +Y AVV E+ W +++ L SF
Sbjct: 93 IK-NYEAVVVEKLWLHSKSLESF 114
>AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102
Length = 101
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 28 NIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTG 87
N +D ++ L R+A+ E+N+ + + L + R+ G + QVV+G + L +E A G +
Sbjct: 19 NANDLQVESLARFAVDEHNK-NENLTLEYKRLLGAKTQVVAGTMHHLTVEVADG--ETNK 75
Query: 88 SYGAVVFEQEWSNTRKLISFDKNHN 112
Y A V E+ W N ++L SF+ H+
Sbjct: 76 VYEAKVLEKAWENLKQLESFNHLHD 100
>AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126
Length = 125
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 28 NIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTG 87
N + I+ L R+AI E+N+ + L F ++ +QVV+G Y L +EA GD T
Sbjct: 44 NQNSGEIESLARFAIQEHNK-QQNKILEFKKIVKAREQVVAGTMYHLTLEAKE--GDQTK 100
Query: 88 SYGAVVFEQEWSNTRKLISFDKN 110
++ A V+ + W N ++L F ++
Sbjct: 101 NFEAKVWVKPWMNFKQLQEFKES 123
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,448,917
Number of extensions: 92854
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)