BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0209700 Os03g0209700|Os03g0209700
         (234 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29280.1  | chr3:11236705-11237947 REVERSE LENGTH=179          212   2e-55

>AT3G29280.1 | chr3:11236705-11237947 REVERSE LENGTH=179
          Length = 178

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 116/133 (87%)

Query: 22  GVASIALLPSGAISGHFTRLPDSVCYGLHGTPISCERECSRGEDYRLIKLSIIDFKNKHE 81
           GVASIALLP G ISGHF ++P S+CYGLHGT ++CE ECSRGEDYRLIKL+IID+  K E
Sbjct: 24  GVASIALLPCGTISGHFIQMPSSICYGLHGTELACETECSRGEDYRLIKLTIIDYNRKKE 83

Query: 82  KVVVVECRGHDAARLQNIDHLHGWEDDIVGLVEKKHGNRKFSLSFECETLKADKAAEEHI 141
           + VVVEC+GHDAAR+ +++H HGWE+D++GLVE+KHG +K S+SFECETLKAD+AAE+HI
Sbjct: 84  QTVVVECKGHDAARINDVEHAHGWEEDVIGLVEEKHGKKKVSVSFECETLKADEAAEDHI 143

Query: 142 SKYMPNLKGLDAV 154
            ++MP L GLDAV
Sbjct: 144 RQFMPKLAGLDAV 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,871,417
Number of extensions: 185549
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)