BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0206600 Os03g0206600|AK058618
(178 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180 196 6e-51
AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181 158 1e-39
AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155 115 2e-26
AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153 110 5e-25
AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153 98 2e-21
AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155 77 5e-15
AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153 59 2e-09
AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153 50 6e-07
>AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180
Length = 179
Score = 196 bits (498), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 117/152 (76%)
Query: 26 VLMKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSF 85
V M D+ GMPGT GL LR ST+DFPSVT+FC+LVAA LQ LWS
Sbjct: 27 VRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSL 86
Query: 86 SLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSEN 145
+LA+VD+YA++VKR L+NRR V LFAIGDG+T+ LTF+AACAS+GITVLIDNDL+ C++N
Sbjct: 87 ALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCAQN 146
Query: 146 HCASFESATAMAFLSWFALSPSFLLNFWSMAS 177
HC FE++TA+AF+SWFA PSFL NFWS+AS
Sbjct: 147 HCVQFETSTALAFISWFAALPSFLFNFWSLAS 178
>AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181
Length = 180
Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 26 VLMKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSF 85
V MKD+ GMPGT GGL LR +T+DF S T+FC LV A LQ LWS
Sbjct: 29 VRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSL 88
Query: 86 SLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSEN 145
SL I+D YALLV+R LRN V F IGDG+T+ LTF+AA AS+GITVLI NDL C+ N
Sbjct: 89 SLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLI-NDLGQCNVN 147
Query: 146 HCASFESATAMAFLSWFALSPSFLLNFWSMAS 177
HC FE+ATAMAF+SWFA+SPSF+LNFWS+A+
Sbjct: 148 HCTRFETATAMAFISWFAVSPSFILNFWSLAT 179
>AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155
Length = 154
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 28 MKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSFSL 87
MK L G PGT GL LR S +F T+FC+L+A+ LQ LWSF L
Sbjct: 1 MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGL 60
Query: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLC---SE 144
A +D+YAL K+ L+N V LF +GD +TA L+ +AAC+S+G+ VL + D+ C S+
Sbjct: 61 ACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQ 120
Query: 145 NHCASFESATAMAFLSWFALSPSFLLNFWSMAS 177
C +E A A++F++W ++ S + FW +AS
Sbjct: 121 YPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153
>AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153
Length = 152
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 28 MKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSFSL 87
M D+PG PGT GL LR ++ F S T+FC+L+AA LQ +WSF L
Sbjct: 1 MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60
Query: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCS-ENH 146
AI+D +AL+ K+ L + V LF +GD +T+ L+ + A +S+GITVL DL CS E
Sbjct: 61 AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE 120
Query: 147 CASFESATAMAFLSWFALSPSFLLNFWSMAS 177
C ++ + A+AFL W ++ S L W +AS
Sbjct: 121 CWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151
>AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153
Length = 152
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 28 MKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSFSL 87
MK + G PGT GL LR S+ DF + T+FCFLVA+ LQ +WSF L
Sbjct: 1 MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGL 60
Query: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSEN-- 145
A +D+YA+ K LR+ + LF +GD +TA L +AAC+S+G+TVL D + C +
Sbjct: 61 ACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPA 120
Query: 146 -HCASFESATAMAFLSWFALSPSFLLNFW 173
C F+ + ++F +WF + S FW
Sbjct: 121 LSCDRFQISVGLSFFNWFLAAISSHTMFW 149
>AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155
Length = 154
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 28 MKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSFSL 87
M+ +PG GT+ LR DF T+FC+L + WS L
Sbjct: 1 MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60
Query: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACA-SSGITVLIDNDLDLCSENH 146
A+ D Y++LVK + R + + GD + + L+ ACA +S +L D +C +
Sbjct: 61 ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSL 120
Query: 147 CASFESATAMAFLSWFALSPSFLLNFWSMAS 177
C ++ + A+AFL WF L S L NFWS+ S
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPS 151
>AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153
Length = 152
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 62 NDFPSVTSFCFLVAAAILQCLWSFSLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAALT 121
DF + T+FC+LV L WS +LA+++ Y++LVK+ + + GD + + L+
Sbjct: 37 EDFYAYTTFCYLVTVMGLVTPWSVTLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLS 96
Query: 122 FSAACASSGITVLIDNDLDLCSENHCASFESATAMAFLSWFALSPSFLLNF 172
AC+++ + VL+ + E C ++ + MAFLS F S NF
Sbjct: 97 LGGACSTASVAVLLMD----AGEKQCDRYKLSATMAFLSSFLSFASTFFNF 143
>AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153
Length = 152
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%)
Query: 28 MKDLPGMPGTAGGLGLRXXXXXXXXXXXXXXXSTNDFPSVTSFCFLVAAAILQCLWSFSL 87
M ++PG GT L LR F T+FC+LV L W+ +L
Sbjct: 1 MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTL 60
Query: 88 AIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSENHC 147
A+VDIY +++++ + R + +IGD + + L ++A +++ + ++ ++ C C
Sbjct: 61 AMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSCPPTIC 120
Query: 148 ASFESATAMAF 158
++ A +AF
Sbjct: 121 NRYQFAATLAF 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,965,928
Number of extensions: 95256
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 8
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)