BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0206100 Os03g0206100|Os03g0206100
(589 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G49890.1 | chr1:18470282-18473463 FORWARD LENGTH=660 195 5e-50
AT3G19570.2 | chr3:6797778-6801344 FORWARD LENGTH=645 193 2e-49
AT2G24070.1 | chr2:10231822-10233986 REVERSE LENGTH=610 155 4e-38
AT4G30710.1 | chr4:14965538-14967881 REVERSE LENGTH=645 150 2e-36
AT5G43160.1 | chr5:17329275-17330736 FORWARD LENGTH=262 129 4e-30
AT3G60000.2 | chr3:22160930-22162768 FORWARD LENGTH=452 91 2e-18
AT4G25190.2 | chr4:12914400-12916001 REVERSE LENGTH=396 90 3e-18
AT2G20815.1 | chr2:8959988-8961917 FORWARD LENGTH=483 82 8e-16
AT2G44190.1 | chr2:18272346-18274332 FORWARD LENGTH=475 81 1e-15
>AT1G49890.1 | chr1:18470282-18473463 FORWARD LENGTH=660
Length = 659
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 151/227 (66%), Gaps = 4/227 (1%)
Query: 316 MASPARGRSGEASP-NGHTMQAPANAPSIISFAAEVRRAKKGENRIEEAHRLRLLDNRHL 374
++SP+R R+G + N + N PSI+SF+A++RR K GE+R+ +AH LRLL NR L
Sbjct: 411 LSSPSRARNGVSDQMNAYNRN---NTPSILSFSADIRRGKIGEDRVMDAHLLRLLYNRDL 467
Query: 375 QWRCINARTDAALLVQSFNAEKTLHSAWKEISKLRDNVXXXXXXXXXXXXXXXXFAILRR 434
QWR +NAR D+ ++VQ NAEK L +AW IS+LR +V +ILR
Sbjct: 468 QWRFVNARADSTVMVQRLNAEKNLWNAWVSISELRHSVTLKRIKLLLLRQKLKLASILRG 527
Query: 435 QIYYLDEWSHIEKHHSSALSAAIEALKASTLRLPVVGGAKADAQGVKEAVNSAVDVMHTM 494
Q+ +L+EWS +++ HSS+LS A E+LKASTLRLP+VG D Q +K AV+SAVDVM M
Sbjct: 528 QMGFLEEWSLLDRDHSSSLSGATESLKASTLRLPIVGKTVVDIQDLKHAVSSAVDVMQAM 587
Query: 495 ASSMCTLLSKVEGTSSVVSELAKLATQEQMLLDQSRDLLSMVAAIHL 541
+SS+ +L SKV+ +SV+ E + +E++LL++ + LS VAA+ +
Sbjct: 588 SSSIFSLTSKVDEMNSVMVETVNVTAKEKVLLERCQGCLSRVAAMQV 634
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 120 RSLSVSFQGESFFYQTXXXXXXXXXXXXXXXXXXTPERRKSVSSVPEAENTRP--QHRWP 177
RSLSVSFQGE+F TPERR+S + EN++P Q RWP
Sbjct: 141 RSLSVSFQGEAFSLPI--SKKKETTSTPVSHRKSTPERRRSTPVRDQRENSKPVDQQRWP 198
Query: 178 AAKPKAS------DPLARSLDCSLDR 197
A + + + L+RSLDC DR
Sbjct: 199 GASRRGNSESVVPNSLSRSLDCGSDR 224
>AT3G19570.2 | chr3:6797778-6801344 FORWARD LENGTH=645
Length = 644
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 153/251 (60%), Gaps = 25/251 (9%)
Query: 316 MASPARGRSGEASP----------------------NGHTMQAPA---NAPSIISFAAEV 350
M SP RG + ASP NG + Q A PSI+ F+A++
Sbjct: 379 MTSPIRGATRPASPSKLWATATSAPARTSSSPSRVRNGVSEQMNAYNRTLPSILCFSADI 438
Query: 351 RRAKKGENRIEEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEKTLHSAWKEISKLRD 410
RR K GE+R+ +AH LRLL NR LQWR NAR D+ L+VQ +AEK L +AW IS+LR
Sbjct: 439 RRGKIGEDRVMDAHLLRLLYNRDLQWRFANARADSTLMVQRLSAEKILWNAWVSISELRH 498
Query: 411 NVXXXXXXXXXXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAAIEALKASTLRLPVV 470
+V +IL+ Q+ YL+EWS ++++HS++LS A EALKASTLRLPV
Sbjct: 499 SVTLKRIKLLLMRQKLKLASILKEQMCYLEEWSLLDRNHSNSLSGATEALKASTLRLPVS 558
Query: 471 GGAKADAQGVKEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELAKLATQEQMLLDQSR 530
G A D Q +K AV+SAVDVMH M SS+ +L SKVE +SV++E+ + +E++LL+Q +
Sbjct: 559 GKAVVDIQDLKHAVSSAVDVMHAMVSSIFSLTSKVEEMNSVMAEMVNITGKEEVLLEQCQ 618
Query: 531 DLLSMVAAIHL 541
L+ VAA+ +
Sbjct: 619 GFLTRVAAMQV 629
>AT2G24070.1 | chr2:10231822-10233986 REVERSE LENGTH=610
Length = 609
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 7/225 (3%)
Query: 319 PARGRSGEASPNG--HTMQAPANAPSIISFAAEVRRAKKGENRIEEAHRLRLLDNRHLQW 376
P+RG SP+ T Q+ + S++SF A+V++ KK IE+ H+LRLL NR+ QW
Sbjct: 354 PSRG----VSPSRIRQTAQSSSTNTSVLSFIADVKKGKKA-TYIEDVHQLRLLYNRYSQW 408
Query: 377 RCINARTDAALLVQSFNAEKTLHSAWKEISKLRDNVXXXXXXXXXXXXXXXXFAILRRQI 436
R NAR + VQS A++TL++ W IS LRD V +IL Q+
Sbjct: 409 RFANARAEGVSYVQSLIAKETLYNVWHAISDLRDLVTTQRICLQQLKLEIKLRSILNDQM 468
Query: 437 YYLDEWSHIEKHHSSALSAAIEALKASTLRLPVVGGAKADAQGVKEAVNSAVDVMHTMAS 496
L++W+ +E+ H S+L+ AI L+A+TLRLP+ GG KAD +K A++SA+DVM +M S
Sbjct: 469 VCLEDWAMVEREHISSLAGAIGDLEANTLRLPLAGGTKADLGSLKLAMSSALDVMQSMGS 528
Query: 497 SMCTLLSKVEGTSSVVSELAKLATQEQMLLDQSRDLLSMVAAIHL 541
S+ +L S++E + +VS+LA +A E LLD+ +LL+ A + +
Sbjct: 529 SIWSLHSQMEEMNKLVSDLAVIAKTENFLLDKCENLLASTAVMEI 573
>AT4G30710.1 | chr4:14965538-14967881 REVERSE LENGTH=645
Length = 644
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Query: 343 IISFAAEVRRAKKGENRIEEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEKTLHSAW 402
++SF +V++ KK + IE+ H+LRLL NR+LQWR AR ++ + +Q +E+TL + W
Sbjct: 412 VLSFITDVKKGKKA-SYIEDVHQLRLLHNRYLQWRFAIARAESVMYIQRLTSEETLFNVW 470
Query: 403 KEISKLRDNVXXXXXXXXXXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAAIEALKA 462
IS+L+D+V ++L Q+ L++W+ +E+ H S+L AI L+A
Sbjct: 471 HAISELQDHVTRQRIGLQQLKLEIKLNSLLNDQMVSLEDWATLERDHVSSLVGAISDLEA 530
Query: 463 STLRLPVVGGAKADAQGVKEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELAKLATQE 522
+TLRLP GG KAD + +K A++SA+DVM M SS+ +LLSKVE + +V+ELA + T+E
Sbjct: 531 NTLRLPATGGTKADTESLKAAMSSALDVMQAMGSSIWSLLSKVEEMNIMVTELAVVVTKE 590
Query: 523 QMLLDQSRDLLSMVAAIHL 541
+ + DLL+ A + +
Sbjct: 591 SSMQGKCEDLLASTAIMQI 609
>AT5G43160.1 | chr5:17329275-17330736 FORWARD LENGTH=262
Length = 261
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 124/211 (58%), Gaps = 1/211 (0%)
Query: 339 NAPSIISFAAEVRRAKKGENRIEEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEKTL 398
N P I FA + + K +N + +AH LRLL +R LQW+ NAR +A + Q E+ L
Sbjct: 47 NTPLIPHFAVD-GKEKIRDNGVADAHLLRLLHSRLLQWQFANARANAVISSQKMREERRL 105
Query: 399 HSAWKEISKLRDNVXXXXXXXXXXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAAIE 458
++AW+ IS L ++V +IL Q+ +L+EW I++++ +L A E
Sbjct: 106 YNAWRSISNLYNSVSMKRIEMQHLKQNLKLISILNMQMGHLEEWLVIDRNYMGSLVGAAE 165
Query: 459 ALKASTLRLPVVGGAKADAQGVKEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELAKL 518
ALK STL LPV GA + Q VK+A+ SAVDVM MASS+C LL KV SS+ +EL ++
Sbjct: 166 ALKGSTLCLPVDCGAMVNVQSVKDAICSAVDVMQAMASSICLLLPKVGKISSLAAELGRV 225
Query: 519 ATQEQMLLDQSRDLLSMVAAIHLASSYATTK 549
+++ +LD RDLL+ ++A+ + T+
Sbjct: 226 NAKDEGMLDVCRDLLNTISALQVTECSLRTQ 256
>AT3G60000.2 | chr3:22160930-22162768 FORWARD LENGTH=452
Length = 451
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 337 PANAPSIISFAAEVRRAKKGENRIEEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEK 396
P AP + A+ ++ +K ++E+ H L+LL NR+LQWR NA E
Sbjct: 229 PPMAPKV---PADTKKQRKVTEQLEDVHSLKLLHNRYLQWRFANANAQVKTQTHKTQTET 285
Query: 397 TLHSAWKEISKLRDNVXXXXXXXXXXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAA 456
+HS +IS+L D+V AI Q L++WS IE+ +S+++S
Sbjct: 286 MIHSFGSKISELHDSVQRKRIELQRLLKTKALLAITESQTPCLEQWSAIEEEYSTSVSQT 345
Query: 457 IEALKASTLRLPVVGGAKADAQGVKEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELA 516
I+A ++LRLP+ G D++ + + + +A ++ + ++ + K + S++SEL
Sbjct: 346 IQAFSNASLRLPLDGDIMVDSKQLGDGLVAASKIVDGITQNVGNYMPKAKEMESLLSELT 405
Query: 517 KLATQEQMLLD 527
++A E+ L +
Sbjct: 406 RVARSERSLTE 416
>AT4G25190.2 | chr4:12914400-12916001 REVERSE LENGTH=396
Length = 395
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
Query: 361 EEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEKTLHSAWKEISKLRDNVXXXXXXXX 420
E+ HR R+ NR LQWR +NART+A + N E L W I K+R+ V
Sbjct: 197 EDYHRFRIFQNRLLQWRFVNARTEATMANLKINVEDQLFWVWLRIYKMRNYVVENLIEIQ 256
Query: 421 XXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAAIEALKASTLRLPVVGGAKADAQGV 480
+L Q+ L+EWS I+ +S ALS L A ++RLP+V GA D +
Sbjct: 257 RLRQDIKVREVLSLQMPLLNEWSKIDAKNSEALSKLTRKLHALSVRLPLVHGATIDMVSI 316
Query: 481 KEAVNSAVDVMHTMASSMCTLLSK-VEGTSSVVSELAKLATQEQMLLDQ 528
E + A++VM + + L + VE ++EL + QE + ++
Sbjct: 317 HEEMVIAIEVMDEIEDVIIKFLPRQVEIILYELTELIGMFNQELLYFEE 365
>AT2G20815.1 | chr2:8959988-8961917 FORWARD LENGTH=483
Length = 482
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 361 EEAHRLRLLDNRHLQWRCINAR-TDAALLVQSFNAEKTLHSAWKEISKLRDNVXXXXXXX 419
E AH+L+L++NR LQWR +NAR D V S + L AW + KL + V
Sbjct: 278 ESAHQLKLMNNRLLQWRFVNARACDVNKNVASQEKNQLL-CAWDTLIKLNNLVLQERIKL 336
Query: 420 XXXXXXXXXFAILRRQIYYLDEWSHIEKHHSSALSAAIEALKASTLRLPVVGGAKADAQG 479
+ Q+ +L+ W +E H S+LS ++L + RLP+ GAK + +
Sbjct: 337 QKKNLEMKLNYVFLSQVKHLEAWEDMEIQHLSSLSIIRDSLHSVLSRLPLKEGAKVNLES 396
Query: 480 VKEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELAKLATQEQMLLDQSRDLLSMVAAI 539
+ +A V + S++ +EG + S+LA++ QE+++L++ DLL M++ +
Sbjct: 397 AVSIIKNAEAVTDAIISTVDDYAPTMEGIVPLASQLAEVVVQEKLMLEKCHDLLRMISEL 456
Query: 540 HL 541
+
Sbjct: 457 EM 458
>AT2G44190.1 | chr2:18272346-18274332 FORWARD LENGTH=475
Length = 474
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Query: 330 NGHTMQAPANAPSIISFAAEVRRAKKGENRIEEAHRLRLLDNRHLQWRCINARTDAALLV 389
NG + P AP+ A+ ++ KK + + H L+LL NR+LQWR NA +
Sbjct: 239 NGVGLSLPPVAPNS-KIQADTKKQKKALGQQADVHSLKLLHNRYLQWRFANANAEVKTQS 297
Query: 390 QSFNAEKTLHSAWKEISKLRDNVXXXXXXXXXXXXXXXXFAILRRQIYYLDEWSHIEKHH 449
Q AE+ +S ++S+L D+V I+ Q L++W+ +E
Sbjct: 298 QKAQAERMFYSLGLKMSELSDSVQRKRIELQHLQRVKAVTEIVESQTPSLEQWAVLEDEF 357
Query: 450 SSALSAAIEALKASTLRLPVVGGAKADAQGVKEAVNSAVDVMHTMASSMCTLLSKVEGTS 509
S++L EAL ++LRLP+ K + + + EA+ A M + ++ L+ K +
Sbjct: 358 STSLLETTEALLNASLRLPLDSKIKVETKELAEALVVASKSMEGIVQNIGNLVPKTQEME 417
Query: 510 SVVSELAKLATQEQMLLDQSR 530
+++SELA+++ E+ ++ R
Sbjct: 418 TLMSELARVSGIEKASVEDCR 438
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.126 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,896,460
Number of extensions: 207202
Number of successful extensions: 633
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 10
Length of query: 589
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 485
Effective length of database: 8,255,305
Effective search space: 4003822925
Effective search space used: 4003822925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)