BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0205800 Os03g0205800|Os03g0205800
(404 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23060.1 | chr2:9812839-9814633 REVERSE LENGTH=414 284 5e-77
AT4G37580.1 | chr4:17658932-17660564 FORWARD LENGTH=404 281 3e-76
AT5G67430.1 | chr5:26910429-26911856 FORWARD LENGTH=387 244 7e-65
AT2G30090.1 | chr2:12843583-12845597 REVERSE LENGTH=387 181 6e-46
>AT2G23060.1 | chr2:9812839-9814633 REVERSE LENGTH=414
Length = 413
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 213/413 (51%), Gaps = 22/413 (5%)
Query: 10 VVIIIREYDPSRDRAGTEAVDRECDVGPTGGMSLHADLLGDPVARIRHSPDYLMLVAETT 69
V++ +REYDPS+D A E V+R C+VGP G +SL DLLGDP+ R+RHSP YLMLVAE
Sbjct: 3 VLVEVREYDPSKDLATVEDVERRCEVGPAGKLSLFTDLLGDPICRVRHSPSYLMLVAEI- 61
Query: 70 SGAXXXXXXXXXXXXXXKSVATGKSCP---------------GAPAVASVGYILGLRVAP 114
G K+V G + P + YILGLRV+P
Sbjct: 62 -GPKEKKELVGMIRGCIKTVTCGITTKRLDLTHNKSQNDVVITKPLYTKLAYILGLRVSP 120
Query: 115 SHRRMGLALRMVRRMEAWFERMGAEYAYMATDKSNEASLRLFTVRCGYSKFRTPSLLXXX 174
+HRR G+ ++V+ ME WF + GAEY+Y AT+ N AS+ LFT +CGY++FRTPS+L
Sbjct: 121 THRRQGIGFKLVKAMEDWFSQNGAEYSYFATENDNHASVNLFTGKCGYAEFRTPSILVNP 180
Query: 175 XXXXXXXXXXXXXXFRLGARDAERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDD 234
+L DAE LY RF+ EFFP DI +VL N+LS+GTF+AV
Sbjct: 181 VYAHRVNISRRVTVIKLEPSDAELLYRLRFSTTEFFPRDIDSVLNNKLSLGTFVAVPRGS 240
Query: 235 GRWRHG-EWRGAERFXXXXXXXXXXXXXXDCGGVFXXXXXXXXXXXXXXXXXXXXXXXXX 293
W G+ +F +C F
Sbjct: 241 CYGSGSRSWPGSAKFLEYPPDSWAVLSVWNCKDSFRLEVRGASRLRRVVSKATRMVDKTL 300
Query: 294 XWMRVPSVPDFFRPFSGWFVYGLGGDGPDXXXXXXXXXXTFVNMAR-GRXXXXXXXXXXC 352
++++PS+P FRPF F+YG+GG+GP N+A+ G
Sbjct: 301 PFLKIPSIPAVFRPFGLHFMYGIGGEGPRAEKMVKALCDHAHNLAKEGGCGVVAAEVAGE 360
Query: 353 DPLRRRIPHWRRLSCTEDLWCMKRLGRVGESDGW--DWARSPPGLSIFVDPRE 403
+PLRR IPHW+ LSC EDLWC+KRLG SDG DW +SPPG SIFVDPRE
Sbjct: 361 EPLRRGIPHWKVLSCAEDLWCIKRLGE-DYSDGSVGDWTKSPPGDSIFVDPRE 412
>AT4G37580.1 | chr4:17658932-17660564 FORWARD LENGTH=404
Length = 403
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 214/404 (52%), Gaps = 17/404 (4%)
Query: 13 IIREYDPSRDRAGTEAVDRECDVGPTGGMSLHADLLGDPVARIRHSPDYLMLVAETTSGA 72
++REYDP+RD G E V+R C+VGP+G +SL DLLGDP+ RIRHSP YLMLVAE +
Sbjct: 3 VVREYDPTRDLVGVEDVERRCEVGPSGKLSLFTDLLGDPICRIRHSPSYLMLVAEMGT-- 60
Query: 73 XXXXXXXXXXXXXXKSVATGKSCP---------GAPAVASVGYILGLRVAPSHRRMGLAL 123
K+V G+ P + Y+LGLRV+P HRR G+
Sbjct: 61 -EKKEIVGMIRGCIKTVTCGQKLDLNHKSQNDVVKPLYTKLAYVLGLRVSPFHRRQGIGF 119
Query: 124 RMVRRMEAWFERMGAEYAYMATDKSNEASLRLFTVRCGYSKFRTPSLLXXXXXXXXXXXX 183
++V+ ME WF + GAEY+Y+AT+ N+AS+ LFT +CGYS+FRTPS+L
Sbjct: 120 KLVKMMEEWFRQNGAEYSYIATENDNQASVNLFTGKCGYSEFRTPSILVNPVYAHRVNVS 179
Query: 184 XXXXXFRLGARDAERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVI-DDDGRWRHGEW 242
+L DAE LY RF+ EFFP DI +VL N+LS+GTF+AV G W
Sbjct: 180 RRVTVIKLEPVDAETLYRIRFSTTEFFPRDIDSVLNNKLSLGTFVAVPRGSCYGSGSGSW 239
Query: 243 RGAERFXXXXXXXXXXXXXXDCGGVFXXXXXXXXXXXXXXXXXXXXXXXXXXWMRVPSVP 302
G+ +F +C F ++++PS+P
Sbjct: 240 PGSAKFLEYPPESWAVLSVWNCKDSFLLEVRGASRLRRVVAKTTRVVDKTLPFLKLPSIP 299
Query: 303 DFFRPFSGWFVYGLGGDGPDXXXXXXXXXXTFVNMAR-GRXXXXXXXXXXCDPLRRRIPH 361
F PF F+YG+GG+GP N+A+ G DPLRR IPH
Sbjct: 300 SVFEPFGLHFMYGIGGEGPRAVKMVKSLCAHAHNLAKAGGCGVVAAEVAGEDPLRRGIPH 359
Query: 362 WRRLSCTEDLWCMKRLGRVGESDGW--DWARSPPGLSIFVDPRE 403
W+ LSC EDLWC+KRLG SDG DW +SPPG+SIFVDPRE
Sbjct: 360 WKVLSCDEDLWCIKRLGD-DYSDGVVGDWTKSPPGVSIFVDPRE 402
>AT5G67430.1 | chr5:26910429-26911856 FORWARD LENGTH=387
Length = 386
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 206/404 (50%), Gaps = 34/404 (8%)
Query: 11 VIIIREYDPSRDRAGTEAVDRECDVGPTGGMSLHADLLGDPVARIRHSPDYLMLVAETTS 70
V+++REYDP RD E ++ C+VG SL DL+GDP+ARIR SP + MLVAE
Sbjct: 7 VVVVREYDPKRDLTSVEELEESCEVG-----SLLVDLMGDPLARIRQSPSFHMLVAEI-- 59
Query: 71 GAXXXXXXXXXXXXXXKSV-ATGKSCPGAPAVAS--VGYILGLRVAPSHRRMGLALRMVR 127
G + V A ++ +P + + + ++ GLRV+P +RRMG+ L++V+
Sbjct: 60 GNEIVGMIRGTIKMVTRGVNALRQADDVSPEINTTKLAFVSGLRVSPFYRRMGIGLKLVQ 119
Query: 128 RMEAWFERMGAEYAYMATDKSNEASLRLFTVRCGYSKFRTPSLLXXXXXXXXXXXXXXXX 187
R+E WF R A Y+Y+ T+ N AS++LFT + GYSKFRTP+ L
Sbjct: 120 RLEEWFLRNDAVYSYVQTENDNIASVKLFTEKSGYSKFRTPTFLVNPVFNHRVTVSRRVK 179
Query: 188 XFRLGARDAERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAV------IDDDGRWRHGE 241
+L DAE LY RF+ EFFP+DI ++L N+LS+GT+LAV + + G
Sbjct: 180 IIKLAPSDAESLYRNRFSTTEFFPSDINSILTNKLSLGTYLAVPRGGDNVSGSLPDQTGS 239
Query: 242 WRGAERFXXXXXXXXXXXXXXDCGGVFXXXXXXXXXXXXXXXXXXXXXXXXXXWMRVPSV 301
W + V+ ++++PS
Sbjct: 240 W--------------AVISIWNSKDVYRLQVKGASRLKRMLAKSTRVFDGAFPFLKIPSF 285
Query: 302 PDFFRPFSGWFVYGLGGDGPDXXXXXXXXXXTFVNMARGR-XXXXXXXXXXCDPLRRRIP 360
P+ F+ F+ F+YG+GG+GP N+AR C+PLR IP
Sbjct: 286 PNLFKSFAMHFMYGIGGEGPRAAEMVEALCSHAHNLARKSGCAVVAAEVASCEPLRVGIP 345
Query: 361 HWRRLSCTEDLWCMKRLGRVGESDGWDWARSPPGLSIFVDPREV 404
HW+ LS EDLWC+KRL + DG DW +SPPGLSIFVDPRE+
Sbjct: 346 HWKVLS-PEDLWCLKRLRY--DDDGVDWTKSPPGLSIFVDPREI 386
>AT2G30090.1 | chr2:12843583-12845597 REVERSE LENGTH=387
Length = 386
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 177/402 (44%), Gaps = 41/402 (10%)
Query: 14 IREYDPSRDRAGTEAVDRECDVGPTGGMSLHADLLGDPVARIRHSPDYLMLVAETTSGAX 73
IR YD RDR +++ C++G L D LGDP+ RIR+SP ++MLVA +
Sbjct: 15 IRCYDDRRDRIQMGRMEKSCEIGHDHQTLLFTDTLGDPICRIRNSPFFIMLVAGVGNKLV 74
Query: 74 XXXXXXXXXXXXXKSVATGKSCPGAPAVASVGYILGLRVAPSHRRMGLALRMVRRMEAWF 133
+ K VGY+LGLRV PS+RR G+ +VR++E WF
Sbjct: 75 GSIQ------------GSVKPVEFHDKSVRVGYVLGLRVVPSYRRRGIGSILVRKLEEWF 122
Query: 134 ERMGAEYAYMATDKSNEASLRLFTVRCGYSKFRTPSLLXXXXXXXXXXXXXXXXXFR-LG 192
E A+YAYMAT+K NEAS LF R GY FR P++L R L
Sbjct: 123 ESHNADYAYMATEKDNEASHGLFIGRLGYVVFRNPAILVNPVNPGRGLKLPSDIGIRKLK 182
Query: 193 ARDAERLYDGRF-AHVEFFPADIGAVLGNQLSIGTFLAVIDDDGRWRHGEWRGAERFXXX 251
++AE LY A EFFP DI +L N+LSIGT++A ++ R W
Sbjct: 183 VKEAESLYRRNVAATTEFFPDDINKILRNKLSIGTWVAYYNNVDNTR--SW--------- 231
Query: 252 XXXXXXXXXXXDCGGVFXXXXXXXXXXXXXXXXXXXXXXXXXXWMRVPSVPDFFRPFSGW 311
D VF + + +PD F PF +
Sbjct: 232 -----AMLSVWDSSKVFKLRIERAPLSYLLLTKVSKLFGNFLSLLGLTVLPDLFTPFGFY 286
Query: 312 FVYGLGGDGPDXXXXXXXXXXTFVNMA--------RGRXXXXXXXXXXCDPLRRRIPHWR 363
F+YG+ +GP NMA + D L+R IPHW+
Sbjct: 287 FLYGVHSEGPHCGKLVRALCEHVHNMAALNDGCACKVVVVEVDKGSNGDDSLQRCIPHWK 346
Query: 364 RLSCTEDLWCMKRLGRVGESDGWDWA-RSPPGLSIFVDPREV 404
LSC +D+WC+K L E + +D + RS S+FVDPREV
Sbjct: 347 MLSCDDDMWCIKPLK--CEKNKFDLSERSKSRSSLFVDPREV 386
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.142 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,909,831
Number of extensions: 222127
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 8
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)