BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0203200 Os03g0203200|AK070827
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03990.1 | chr3:1033788-1034591 FORWARD LENGTH=268 344 4e-95
AT4G37470.1 | chr4:17617045-17618363 REVERSE LENGTH=271 280 7e-76
AT3G24420.1 | chr3:8863111-8864883 REVERSE LENGTH=274 189 1e-48
>AT3G03990.1 | chr3:1033788-1034591 FORWARD LENGTH=268
Length = 267
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 167/251 (66%), Positives = 193/251 (76%)
Query: 55 KLLQILNXXXXXXXXXXXXLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHF 114
+L+ LN L+HGFGTDQSAW +LPY T+++RVVLYDLVCAGSVNPD+F
Sbjct: 5 NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYF 64
Query: 115 DFRRYDNXXXXXXXXXXXXXXXRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASP 174
DF RY I CA+VGHSVSAMIGI+ASIRRP+LF+KL+LIG SP
Sbjct: 65 DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124
Query: 175 RFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRP 234
RFLND DYHGGFE EI++VF AM ANY AW G+APLAVGADVPAAV+EFSRTLFNMRP
Sbjct: 125 RFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRP 184
Query: 235 DISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQT 294
DISL V +TVF +DLRGVLG+VR P V+QT +DVSVPASVA YL++HLGG TTVE L+T
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244
Query: 295 EGHLPHLSAPS 305
EGHLP LSAP+
Sbjct: 245 EGHLPQLSAPA 255
>AT4G37470.1 | chr4:17617045-17618363 REVERSE LENGTH=271
Length = 270
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 128/232 (55%), Positives = 171/232 (73%), Gaps = 1/232 (0%)
Query: 74 LSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNXXXXXXXXXXXX 133
L HGFGTDQS W ++P+L D+RVVLYD + AG+ NPD+FDF RY N
Sbjct: 22 LGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAIL 81
Query: 134 XXXRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEIQQ 193
+I C FVGHSVSAMIG+LAS+ RPDLF+K+V+I ASPR++ND DY GGFE E++ Q
Sbjct: 82 EDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQ 141
Query: 194 VFDAMGANYSAWATGYAPLAVGADVPA-AVQEFSRTLFNMRPDISLHVCQTVFKTDLRGV 252
+F+A+ +NY AW G+APLAVG D+ + AVQEFSRTLFNMRPDI+L V QT+F++D+R +
Sbjct: 142 LFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQI 201
Query: 253 LGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAP 304
L V PC ++Q+ +D++VP V+ YL A+LG + VE + ++GHLP LS+P
Sbjct: 202 LPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSP 253
>AT3G24420.1 | chr3:8863111-8864883 REVERSE LENGTH=274
Length = 273
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 2/232 (0%)
Query: 74 LSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDH-FDFRRYDNXXXXXXXXXXX 132
L+HGFG DQS W +++P L++ +V+++D + +G++ +D +Y++
Sbjct: 28 LAHGFGGDQSVWDKIIPVLSQSFKVLVFDWLFSGAIKDQTLYDPSKYNSLDVFSDDLIAL 87
Query: 133 XXXXRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEIQ 192
+ FVGHS+S +IG ASI+RPDLF L+LI ASPR++N DY GGFE ++I
Sbjct: 88 MEELKFGPVVFVGHSMSGVIGCAASIKRPDLFTNLLLIAASPRYINSEDYKGGFESKDID 147
Query: 193 QVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPDISLHVCQTVFKTDLRGV 252
+ ++G+NY AWA ++ V + +VQ F ++L M+P+ +L + + VF +D R +
Sbjct: 148 TIITSIGSNYEAWAVDFSSFVVDSRDSLSVQRFEKSLKKMKPETALALAKIVFGSDEREI 207
Query: 253 LGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTE-GHLPHLSA 303
LG V PC V+Q DV VP SVA +++ + G++TVE ++ GH P +++
Sbjct: 208 LGQVSVPCHVIQPGNDVVVPVSVAYFMQEKIKGKSTVEIIEDAIGHFPQMTS 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,858,449
Number of extensions: 173058
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)