BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0202200 Os03g0202200|AK121020
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304 300 5e-82
AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275 231 3e-61
AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275 228 2e-60
AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277 226 7e-60
AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227 207 5e-54
AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164 55 3e-08
>AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304
Length = 303
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/301 (48%), Positives = 207/301 (68%), Gaps = 27/301 (8%)
Query: 4 KGPGLFSDIGKRAKDLLTKDYTYDQK---------------------------XXXXXXX 36
KGPGLF+DIGK+AKDLLT+DY DQK
Sbjct: 3 KGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVGTERENEYQDDIYFCLRTRCLIM 62
Query: 37 XXXXXXXXXAVKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTS 96
A+KKGG++ DV++ YKYK+ L DVK+DT+S++ TT+T+ ++LPSTK + S
Sbjct: 63 SENEALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIAS 122
Query: 97 VKLPDYNSGKVEMQYFHENASFATAVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKF 156
K+PDYNS K+E+QYFH++A+ A +K +P+++ + T G+ ++FGAEAG+DT + F
Sbjct: 123 FKVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYDTTSKTF 182
Query: 157 TKYSAAIGVTKPDYHAAIVLADKGDTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTV 216
TKY+A I VTKPD +I+L DKGD++K S ++H D+ ++++ V E+ R+ STNENT+TV
Sbjct: 183 TKYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITV 242
Query: 217 GGLYKVDPETAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALR 276
GGLY +D TAVKA+LNN G L ALLQHEV P+S++T+S E DTKAL++ P+FGL+LAL+
Sbjct: 243 GGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALK 302
Query: 277 P 277
P
Sbjct: 303 P 303
>AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275
Length = 274
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 175/272 (64%), Gaps = 2/272 (0%)
Query: 6 PGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYKYKS 65
P F+DIGK+AKDLL KDY +D K +KK + D+S++YK ++
Sbjct: 5 PAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLYKGQN 64
Query: 66 TLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGMK 125
T+VD+K+D+ S++ST +T+ ++LPS K V S K+PD+ SGK+++QY H +A+ +++G+
Sbjct: 65 TIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSSIGLN 124
Query: 126 PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKV 185
P+P+++ S T G+Q + G E FDTA+ TKY+A IG AA++L DKG++++
Sbjct: 125 PTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGESLRA 184
Query: 186 SGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHE 245
+ V+ ++ +S AEL RR S N+ TVG + VD T VK R +N+GK ++Q E
Sbjct: 185 TYVHTVN--PTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQRE 242
Query: 246 VKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
+PKS +T S E+D+KA+ PK GLALAL+P
Sbjct: 243 WRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274
>AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275
Length = 274
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 170/275 (61%), Gaps = 2/275 (0%)
Query: 3 MKGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYK 62
+KGPGL+++IGK+A+DLL +DY DQK KG L+ DV++ K
Sbjct: 2 VKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVK 61
Query: 63 YKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAV 122
+ DVKV T+S++ TTLT + P K++ KLPD+ SGK E+QYFH+ A +T+V
Sbjct: 62 NNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSV 121
Query: 123 GMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDT 182
G +P+V FSG G GL+ G + ++T +G F ++A TK D A+++L DKG+
Sbjct: 122 GFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE- 180
Query: 183 VKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALL 242
K++ Y+ + V AE++ +T EN +TVG + +DP T VKAR+NN G AL+
Sbjct: 181 -KLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALI 239
Query: 243 QHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
QHE +PKS T+SGE D+KA+D+ K G+ALAL+P
Sbjct: 240 QHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274
>AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277
Length = 276
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/275 (43%), Positives = 174/275 (63%)
Query: 3 MKGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYK 62
+KGPGL+++IGK+A+DLL KD+ DQK KKG L DV+ +
Sbjct: 2 VKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSR 61
Query: 63 YKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAV 122
K+ D+KV T+S T TV + P + + S K+PD NSGKVE+QY HE A +T++
Sbjct: 62 RKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSM 121
Query: 123 GMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDT 182
G+ +P V FSG G+ LA G + FDT +G FTK +A + TK D A++ + DKGD
Sbjct: 122 GLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDL 181
Query: 183 VKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALL 242
+ S + ++ ++V AE++ +LS+ ++T+TVG + +DP T+VKAR+N+ G +AL+
Sbjct: 182 LNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALI 241
Query: 243 QHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
QHE KPKS TISGE DTK++D+ K GLALAL+P
Sbjct: 242 QHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276
>AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227
Length = 226
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 158/274 (57%), Gaps = 50/274 (18%)
Query: 4 KGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYKY 63
KGPGLF+DIGK AKDLLT+DY+ DQK A+K G L+ +V++ YKY
Sbjct: 3 KGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQYKY 62
Query: 64 KSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVG 123
++T DVK+DT+ N+ + V P K V+ D+N+
Sbjct: 63 RNTFFDVKIDTDFNVKSL-----VYPMNKFVS----IDHNT------------------- 94
Query: 124 MKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTV 183
G+DT + FTKY+ + VTKPD +I+L DKGD++
Sbjct: 95 ----------------------LTGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSI 132
Query: 184 KVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243
K S VY+LD+ +S+ V E+ R++STNE T+TVGGLY VD T VKA+LN+ GK ALLQ
Sbjct: 133 KASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQ 192
Query: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
HE PKS++TISGE DTK LD+ P+ GL+L+L+P
Sbjct: 193 HEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226
>AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164
Length = 163
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 114 ENASFATAVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAA 173
E A +T VG+ +P++ FS G FG E D TK + + + D
Sbjct: 4 ERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTT 63
Query: 174 IVLADKGDTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLN 233
+ K S Y+ K+ AE LS N+ ++G + + ++A L+
Sbjct: 64 FSIDKKASLFTAS--YYQRLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQALLS 121
Query: 234 --NTGKLAALLQHEVKPKSVLTISGEFDTKALDRPP-KFGLALAL 275
N G + L QH KS TI+GE + L+ +FGLA+ L
Sbjct: 122 VSNGGSMRVLFQHHWTLKSFFTIAGE---RLLNHSSQRFGLAVEL 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,326,025
Number of extensions: 195374
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 8
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)