BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0200200 Os03g0200200|AK066091
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183 96 1e-20
AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160 65 4e-11
AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162 61 5e-10
AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167 58 4e-09
AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174 54 4e-08
>AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183
Length = 182
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 97/221 (43%), Gaps = 50/221 (22%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQAAE ATV+I HP + ER YW+++A +M +NPGHYVA V+
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVV-----TSPTMKNE 55
Query: 61 XXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEETKP 120
+K G VYRLVSFEEVL EFA+K+ VKL +
Sbjct: 56 KGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLL------------- 102
Query: 121 AKPRRRRGSGGIAPEEEYSSRSLAKVMRQSDEPEPVARASPSAAPKPESDIDDHA-DGEA 179
+ GG+ ++ + K+ +++ + +P++ P P D D+A GE
Sbjct: 103 ------KEGGGLDLTKKKTKHRKKKLDQET------GKVNPNSDPNPNQDGADNAVAGEN 150
Query: 180 AEPDCDLEALLPPHGVVFGRR------VARQWRPALQSIAE 214
G F RR WRPAL SI E
Sbjct: 151 G-------------GDGFMRRSHGGGRGGGGWRPALHSIPE 178
>AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160
Length = 159
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQA + A VVIQHP G+ E+ +SA VM NPGH V+ +I
Sbjct: 1 MGNCQAVDTARVVIQHP-NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHG 59
Query: 61 XXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEETK 119
+ G VYRL++ +EV++ +K+ KL + + K DD E K
Sbjct: 60 GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKES-KGSDDKLEMVK 117
>AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162
Length = 161
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQAAE AT VIQ P G++ R Y ++A V+ ++PGH+VA ++
Sbjct: 1 MGNCQAAEAATTVIQQP-DGKSVRFYCTVNASEVIKSHPGHHVALLLSSAVPHGGSLRVT 59
Query: 61 XXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDV-EEETK 119
++ G VYRL+S EEV++ +K+ K+ + I + V EEE
Sbjct: 60 RIKLLR------PSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKK--IHGEFSVAEEEIN 111
Query: 120 PAKPR 124
P R
Sbjct: 112 PLTLR 116
>AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVI 47
MGNCQA A +V+QHPGG +R Y ++S VMA PGHYV+ +I
Sbjct: 1 MGNCQAVNAAVLVLQHPGGI-IDRYYSSVSVTEVMAMYPGHYVSLII 46
>AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174
Length = 173
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAV-------IXXXXXX 53
MGNCQA + A +V+QHP G+ +R Y +S +M PGHYV+ + I
Sbjct: 1 MGNCQAVDAAALVLQHP-DGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTT 59
Query: 54 XXXXXXXXXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSR 105
G YRL++ +EV++ +K++ K +
Sbjct: 60 TDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKK 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,090,857
Number of extensions: 160292
Number of successful extensions: 655
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 5
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)