BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0197900 Os03g0197900|AK111079
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 78 6e-15
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 77 1e-14
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 72 4e-13
AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184 68 7e-12
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 64 1e-10
AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297 61 6e-10
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 61 7e-10
AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350 55 3e-08
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 54 7e-08
AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262 52 5e-07
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 181 AGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAFG 240
A SFAVVK+S DP DFR SM EM+V R I+ L++LL+CFL+LN ++H + IV F
Sbjct: 153 AESFAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFL 212
Query: 241 DVWEAVFS 248
+++ +FS
Sbjct: 213 EIYATLFS 220
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 177 GVVVAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIV 236
V+V G AVVK+S+DP DF+ SM EM+V + +++ LE+LL CFL+LN +RH R IV
Sbjct: 222 AVMVEG-VAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIV 280
Query: 237 AAFGDVWEAV 246
AF ++W A+
Sbjct: 281 RAFSEIWVAL 290
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 179 VVAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAA 238
+ S AV K SDDP DFR+SM +M++ IY D L LL+CFL+LN H IV A
Sbjct: 63 LATASVAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRA 122
Query: 239 FGDVWE 244
F ++WE
Sbjct: 123 FSEIWE 128
>AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184
Length = 183
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 188 KRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAFGDVWEAVF 247
K SDDP DFR+SM +M++ IY + L LL CFL+LN H I+ AF ++W+ VF
Sbjct: 92 KDSDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIWDGVF 151
Query: 248 S 248
S
Sbjct: 152 S 152
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 180 VAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAF 239
V SFAV+KRS DP+ DFR SM EM+ I + LE LL C+L LN + + I+ F
Sbjct: 250 VLESFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVF 309
Query: 240 GDVW 243
+W
Sbjct: 310 EQIW 313
>AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297
Length = 296
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 180 VAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAF 239
V SFA+V S DP DFR SM EM++ + + LE LL C+L+LN + I+ AF
Sbjct: 222 VVKSFAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAF 281
Query: 240 GDVW 243
+ W
Sbjct: 282 ENTW 285
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 180 VAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAF 239
+ SFAV+K S DP DFR SM EM+ I ++ +E LL C+L LN + + I+ F
Sbjct: 241 ILDSFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVF 300
Query: 240 GDVWEAVFSNPTSSQ 254
VW V ++ +S+
Sbjct: 301 VQVWLEVINSTFASK 315
>AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350
Length = 349
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 176 DGVVVAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDI 235
DG + SFAVVK S DP+ DFR SM EM++ I + L+ LL C+L LN + I
Sbjct: 276 DGGMENESFAVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMI 335
Query: 236 VAAFGDV 242
++ F V
Sbjct: 336 ISVFQQV 342
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 186 VVKRSDDPRADFRRSMAEMVVGRAIYDADGLERLLRCFLALNHQRHRRDIVAAFGDVW 243
VVK S DP+ DF+ SM EM+ I LE LL C+L LN + I+ F +W
Sbjct: 202 VVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIW 259
>AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262
Length = 261
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 189 RSDDPRADFRRSMAEMVVGRAI-YDADGLERLLRCFLALNHQRHRRDIVAAFGDVW 243
SDDP +DF+RSM EMV A+ +D LE+LL FL +N + R I AAF D+
Sbjct: 115 ESDDPYSDFKRSMEEMVEAHALHHDWKSLEKLLLQFLKVNAKTSHRYIFAAFVDLL 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,611,021
Number of extensions: 139062
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 10
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)