BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0196800 Os03g0196800|AK058535
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13120.1  | chr3:4220310-4221526 REVERSE LENGTH=192            204   2e-53
AT5G62300.1  | chr5:25021388-25022235 REVERSE LENGTH=125           50   9e-07
AT3G45030.1  | chr3:16471606-16472312 REVERSE LENGTH=125           50   9e-07
AT3G47370.2  | chr3:17453671-17454437 REVERSE LENGTH=123           49   1e-06

>AT3G13120.1 | chr3:4220310-4221526 REVERSE LENGTH=192
          Length = 191

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 91/107 (85%), Positives = 103/107 (96%)

Query: 79  DGEQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSP 138
           D +++APKQKIRIKLRSYWVPLIEDSCK+I++AA+ TNAKTMGPVPLPTK+R+YCVL SP
Sbjct: 85  DADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSP 144

Query: 139 HVHKDSRFHFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 185
           HVHKD+RFHFEIRTHQR+IDI+YPTAQTIDSLMQL LPAGVDVEVKL
Sbjct: 145 HVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191



>AT5G62300.1 | chr5:25021388-25022235 REVERSE LENGTH=125
          Length = 124

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 81  EQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHV 140
           E L    KIRI L S  V  +E  C  ++  AK    +  GPV +PTK        +P  
Sbjct: 17  EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCG 76

Query: 141 HKDSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 185
              + +  FE+R H+R+ID ++ +   +  +  + +  GV+VEV +
Sbjct: 77  EGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121



>AT3G45030.1 | chr3:16471606-16472312 REVERSE LENGTH=125
          Length = 124

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 81  EQLAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHV 140
           E L    KIRI L S  V  +E  C  ++  AK    +  GPV +PTK        +P  
Sbjct: 17  EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCG 76

Query: 141 HKDSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 185
              + +  FE+R H+R+ID ++ +   +  +  + +  GV+VEV +
Sbjct: 77  EGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121



>AT3G47370.2 | chr3:17453671-17454437 REVERSE LENGTH=123
          Length = 122

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 87  QKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF 146
            KIRI L S  V  +E  C  ++  AK    +  GPV +PTK        +P     + +
Sbjct: 21  HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTW 80

Query: 147 -HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 185
             FE+R H+R+ID ++ +   +  +  + +  GV+VEV +
Sbjct: 81  DRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,139,100
Number of extensions: 120593
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 4
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)