BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0194100 Os03g0194100|AK073045
(402 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55530.1 | chr5:22494439-22495656 FORWARD LENGTH=406 353 7e-98
AT1G50570.1 | chr1:18726400-18727566 REVERSE LENGTH=389 330 6e-91
AT5G12300.1 | chr5:3978508-3979632 REVERSE LENGTH=375 186 2e-47
>AT5G55530.1 | chr5:22494439-22495656 FORWARD LENGTH=406
Length = 405
Score = 353 bits (907), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 267/382 (69%), Gaps = 19/382 (4%)
Query: 26 GFNTETTTKEKPIGYLDVFVHQARDIHNICIYHKQDVYAKLCLTSDPDVSCSTKVINGGG 85
G ++++ ++ +G L+V+VHQARDIHNICIYHKQDVYAKLCLTSDPD S STK+INGGG
Sbjct: 38 GKDSKSCGRQDLVGALEVYVHQARDIHNICIYHKQDVYAKLCLTSDPDKSVSTKIINGGG 97
Query: 86 RNPVFDDGLRLDVRTVDASLKCEIWMLSRVRNYLEDQLLGFALVPLADIVMADGKLVQEF 145
RNPVFDD ++LDVR +D SLKCEI+M+SRV+NYLEDQLLGF LVP+++++ +GKL +EF
Sbjct: 98 RNPVFDDNVKLDVRVLDTSLKCEIYMMSRVKNYLEDQLLGFTLVPMSELLFKNGKLEKEF 157
Query: 146 SMTSTDLLHTPAGFVQLSLSYVGCSPDVIPIPAPNKSALVVNGSGND----SSVPCELEK 201
S++STDL H+PAGFVQLSLSY G PDV+ IP+ S++ ++ + D SVP EL+K
Sbjct: 158 SLSSTDLYHSPAGFVQLSLSYYGSYPDVMAIPS-MPSSVSIDETTKDPEGSESVPGELDK 216
Query: 202 IEFPDLNVVNENQIMVSKYFEMETLSYEDSVKVDNPKLVQSDAAVPGTELFNKNLDEYRE 261
IEFPD NV NEN+ MVS+YF + + S DS D+ LV SDA + N ++
Sbjct: 217 IEFPDPNVANENEKMVSEYFGI-SCSTIDSETSDS--LVTSDAE---NHVTNSVTSILKQ 270
Query: 262 GSPQSCVSTTDYSTATSVTPHSVSE-PSDTILAASPTGSQREKSQDVTDGEADSSDVPLK 320
SP+S + T+ + + + HS +E P+ L+ + + ++S+ GE
Sbjct: 271 DSPESS-NATNGAASPHASAHSATETPNHEHLSVVNSKASSQESESEASGETSEE----- 324
Query: 321 GEVVKPVISINLNPGESVVQEDIVNMYMKSMQQFTESLAKMKLPLDVENSSPSTENNTDS 380
+ VK V+++ + P VVQ+DIV+MYMKSMQQFT+SLAKMKLPLD+++ + S +++DS
Sbjct: 325 -KTVKSVLTVKVEPESKVVQQDIVDMYMKSMQQFTDSLAKMKLPLDIDSPTKSENSSSDS 383
Query: 381 ITAEKPSPSKGSRVFYGSRAFF 402
P + GSRVFYGSR FF
Sbjct: 384 QKLPTPKSNNGSRVFYGSRPFF 405
>AT1G50570.1 | chr1:18726400-18727566 REVERSE LENGTH=389
Length = 388
Score = 330 bits (847), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 248/372 (66%), Gaps = 28/372 (7%)
Query: 38 IGYLDVFVHQARDIHNICIYHKQDVYAKLCLTSDPDVSCSTKVINGGGRNPVFDDGLRLD 97
IG L+VFVHQARDIHNICIYHKQDVYAKLCLT+DP+ S STK+INGGG+NPVFDD L+ D
Sbjct: 38 IGVLEVFVHQARDIHNICIYHKQDVYAKLCLTNDPENSLSTKIINGGGQNPVFDDTLQFD 97
Query: 98 VRTVDASLKCEIWMLSRVRNYLEDQLLGFALVPLADIVMADGKLVQEFSMTSTDLLHTPA 157
V+ +D SLKCEI+M+SRV+NYLEDQLLGF+LVPL+++++ +GKL +EFS++STDL H+PA
Sbjct: 98 VKNLDCSLKCEIFMMSRVKNYLEDQLLGFSLVPLSEVIVRNGKLEKEFSLSSTDLYHSPA 157
Query: 158 GFVQLSLSYVGCSPDVIPIPAPNKSALVVNGSGNDSSVPCELEKIEFPDLNVVNENQIMV 217
GFV+LSLSY G SPDV+ IPA V + P E ++ EF D +V EN MV
Sbjct: 158 GFVELSLSYAGDSPDVMHIPA-------VPTADETELAPIEFDESEFLDPKIVCENNQMV 210
Query: 218 SKYFEMETLSYEDSVKVDNPKLVQSDAAVPGTELFNKNLDEYREGSPQSCVSTTDYSTAT 277
SKYF T S D V+ ++ + + + +D E +P + VST S+ +
Sbjct: 211 SKYFST-TCSDSDDFASSETGFVEVNSIL--SAVVETAVD---EAAPANSVSTNGISSPS 264
Query: 278 SVTPHSVSEPSDTILAASPTGSQREKSQD-------VTDGEADSSDVPLKGEVVKPVISI 330
+ S D + S G+ + Q+ + G+ D +D + VVKPV+++
Sbjct: 265 TAVSSGSSGTHD-VSKQSSEGNNSDSEQEAKKPTDIIKSGDLDKTD---EEAVVKPVLTV 320
Query: 331 NLNPGESVVQEDIVNMYMKSMQQFTESLAKMKLPLDVENSSPSTENNTDSITAEKPSPSK 390
N+ P + VVQ+DIV+MY KS+QQFTESLAKMKLPLD+++ + S +++ T + S
Sbjct: 321 NIEPEQKVVQQDIVDMYTKSLQQFTESLAKMKLPLDIDSPTQSENSSSSQQTPK----SA 376
Query: 391 GSRVFYGSRAFF 402
SRVFYGSRAFF
Sbjct: 377 SSRVFYGSRAFF 388
>AT5G12300.1 | chr5:3978508-3979632 REVERSE LENGTH=375
Length = 374
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 129/188 (68%), Gaps = 6/188 (3%)
Query: 39 GYLDVFVHQARDIHNICIYHKQDVYAKLCLTSDPDVSCSTKVINGGGRNPVFDDGLRLDV 98
G L V+VH AR+I+NICIY QDVYAK LT +PD + ST++I+ G+NP F+ L +DV
Sbjct: 21 GVLQVYVHNARNINNICIYDNQDVYAKFSLTYNPDDTISTRIIHRAGKNPEFNQKLMIDV 80
Query: 99 RTVDAS---LKCEIWMLSRVRNYLEDQLLGFALVPLADIVMADGKLVQEFSMTSTDLLHT 155
+DA LKCEIWM+SR R+Y+EDQLLGFALVP++DI+ D + Q++S++STDL H+
Sbjct: 81 TQIDAHAAVLKCEIWMMSRARHYMEDQLLGFALVPISDIIGQDS-VTQDYSLSSTDLFHS 139
Query: 156 PAGFVQLSLSYVGCSPDVIPIPAPNKSALVVNGSGNDSSVP--CELEKIEFPDLNVVNEN 213
PAG V+L+LS V S P N +++ D V + +IEFPD+NV NEN
Sbjct: 140 PAGTVKLTLSIVNPSSTSSSNPKINTTSISSEVVLLDPQVSETVDYTRIEFPDINVANEN 199
Query: 214 QIMVSKYF 221
+ MV++YF
Sbjct: 200 KQMVTEYF 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,163,848
Number of extensions: 405471
Number of successful extensions: 1042
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)