BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0193700 Os03g0193700|Os03g0193700
         (149 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12070.1  | chr3:3845420-3847140 REVERSE LENGTH=318             75   2e-14
AT5G12210.1  | chr5:3947254-3949595 FORWARD LENGTH=322             57   3e-09

>AT3G12070.1 | chr3:3845420-3847140 REVERSE LENGTH=318
          Length = 317

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 88  QKDSFESLVMEHIRLNGAYWGLTTLDLLHKLHAVEADEFIGWIMSCYHPDSGSARRGG 145
           +K+SFES+VM+H+R+NGAYWGLTTL LL KL +V  DE + W+M+C H   G A   G
Sbjct: 22  KKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTG 79



>AT5G12210.1 | chr5:3947254-3949595 FORWARD LENGTH=322
          Length = 321

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 30/99 (30%)

Query: 47  KHVRYIVTVEKVGRLSLGCELLDXXXXXXXXXXXXXXXXVMQKDSFESLVMEHIRLNGAY 106
           KHVRYI+  EK                              +K+SFES+VM+H+R+NGAY
Sbjct: 16  KHVRYILMAEK------------------------------KKESFESVVMDHLRMNGAY 45

Query: 107 WGLTTLDLLHKLHAVEADEFIGWIMSCYHPDSGSARRGG 145
           WGLTTLDLL KL  V  +E I W+M+C H   G A   G
Sbjct: 46  WGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTG 84



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,508,597
Number of extensions: 69171
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)