BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0192400 Os03g0192400|AK070573
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33220.1  | chr2:14078974-14079929 FORWARD LENGTH=144          234   1e-62
AT1G04630.1  | chr1:1289921-1290986 REVERSE LENGTH=144            231   1e-61

>AT2G33220.1 | chr2:14078974-14079929 FORWARD LENGTH=144
          Length = 143

 Score =  234 bits (597), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 124/139 (89%)

Query: 1   MTEAWVRHKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA +R KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSA+AIFLT  GAFAWG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGQGNKVRRALKEEKIAARTALVPVLQAEEDERFVKEWTKSLMWEEIIMKDVPGWKV 120
           MYQVGQGNK+RRALKEEK AAR A++P+LQAEEDERFV EW K L +E  +MKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GQSVYNSGKWMPPATGELR 139
           G++VYNSG+WMPPATGELR
Sbjct: 121 GENVYNSGRWMPPATGELR 139



>AT1G04630.1 | chr1:1289921-1290986 REVERSE LENGTH=144
          Length = 143

 Score =  231 bits (588), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 123/139 (88%)

Query: 1   MTEAWVRHKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA +R+KPGMASVKDMP+LQDGPPPGGFAPVRYARRI   GPSA+A+FL   GAFAWG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGQGNKVRRALKEEKIAARTALVPVLQAEEDERFVKEWTKSLMWEEIIMKDVPGWKV 120
           MYQVGQGNK+RRALKEEK AAR  ++P+LQAEEDERFV EW K L +E  +MKDVPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GQSVYNSGKWMPPATGELR 139
           G++VYNSG+WMPPATGELR
Sbjct: 121 GENVYNSGRWMPPATGELR 139



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,593,051
Number of extensions: 142445
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)