BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0191200 Os03g0191200|AK070228
         (244 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78170.1  | chr1:29414160-29414941 FORWARD LENGTH=222           57   7e-09
AT4G08910.1  | chr4:5712389-5713247 FORWARD LENGTH=213             57   1e-08
AT1G22250.1  | chr1:7858961-7859648 FORWARD LENGTH=201             52   2e-07

>AT1G78170.1 | chr1:29414160-29414941 FORWARD LENGTH=222
          Length = 221

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 184 SREMVAAVCARCHMLVMMCREWPACPNCKFVHPTANQSS 222
            +EMV  VC +CHMLVM+C   P CPNCKF+HP  + S+
Sbjct: 170 GQEMVTTVCMKCHMLVMLCTSTPVCPNCKFMHPHDHSST 208



>AT4G08910.1 | chr4:5712389-5713247 FORWARD LENGTH=213
          Length = 212

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 186 EMVAAVCARCHMLVMMCREWPACPNCKFVHPTANQS 221
           EMVA VC +CHMLVM+C+  PACPNCKF+H   + S
Sbjct: 164 EMVARVCMKCHMLVMLCKASPACPNCKFMHSPEDTS 199



>AT1G22250.1 | chr1:7858961-7859648 FORWARD LENGTH=201
          Length = 200

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 185 REMVAAVCARCHMLVMMCREWPACPNCKFVHPTANQSS 222
           +EM+  VC +CHMLVM+C+    CPNCKF+H   + S+
Sbjct: 150 QEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSST 187



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,399,736
Number of extensions: 71768
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)