BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0187300 Os03g0187300|AK106710
(384 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10940.1 | chr5:3448890-3454127 REVERSE LENGTH=758 405 e-113
AT3G45620.2 | chr3:16745918-16747993 FORWARD LENGTH=516 88 7e-18
AT4G38480.1 | chr4:18003957-18006002 FORWARD LENGTH=472 84 9e-17
AT4G35140.1 | chr4:16723873-16726477 REVERSE LENGTH=497 83 2e-16
AT5G08560.1 | chr5:2771104-2773827 REVERSE LENGTH=590 57 2e-08
AT5G43920.1 | chr5:17673397-17675630 FORWARD LENGTH=524 50 1e-06
>AT5G10940.1 | chr5:3448890-3454127 REVERSE LENGTH=758
Length = 757
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/393 (52%), Positives = 275/393 (69%), Gaps = 12/393 (3%)
Query: 1 MQVATKSLEMGTNLMLGVEACSTILLAVDHNIDDNMKHDCLCTRAGLYLKRRWKNDVYMA 60
+++A SLE GT++ +EA + +L A ++I+ ++H+CLCTRA L LKR+WKND +MA
Sbjct: 368 VEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMA 427
Query: 61 IRDCNSARCIDSRSFQAHLYMAEALLQLGRLKEASEYVDALNTIVPPYSQSVKQVENIKE 120
+RDC++AR ID+ SF+AH YM+EAL QLG+ KEA ++ A + P + V +VE+IK
Sbjct: 428 VRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKR 487
Query: 121 QLFAAELEKNKKDQVGNTYTDARHGXXXXXXXXXXXXXXXGSSSQEGREDSDYDDEMELD 180
L AA EKN++ G T + S+ REDSDYD+E+ELD
Sbjct: 488 DLQAAGAEKNEETGAGTTRVLS---LSDILYRSEANSDSSHDMSRSEREDSDYDEELELD 544
Query: 181 FETSASGDESRDSDPGFVRGSLSLRFHRR-DSQTDEHSGEN---GSAESTQNGDSAYQPE 236
+TS S DE RD+D +RGSL+LR HR D + E++ +N G+A S+QN ++YQPE
Sbjct: 545 IQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQPE 604
Query: 237 VAVDMKQRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGA 296
A+DMK+RYV HCNVGTDIKQASFLG++GE+IASGSDDGRWFIWEK+TGRL+K+L GD +
Sbjct: 605 GAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDES 664
Query: 297 VVNCIQSHPYDCAVATSGIDNTIKLWTPDANATSMIAG-----PEIDVSSVIENNQRKLS 351
V+NCIQ HP+D VATSGIDNTIK+W+P A+ S++AG +V V+E+NQ+KLS
Sbjct: 665 VLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQQKLS 724
Query: 352 RNREILLPFEFLERFRMHEFGEGSLHPLECAQS 384
RNRE L E ++RFRM EF EG+ HP EC QS
Sbjct: 725 RNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757
>AT3G45620.2 | chr3:16745918-16747993 FORWARD LENGTH=516
Length = 515
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 87/146 (59%), Gaps = 10/146 (6%)
Query: 235 PEVAVDMK--QRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLA 292
PE +M+ Q Y+ H N T +K +F G E++ SGSD G FIW+K+ G+L++ +
Sbjct: 336 PEKLQEMEEPQVYIGHRNAQT-VKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMV 394
Query: 293 GDGAVVNCIQSHPYDCAVATSGIDNTIKLWTPDANATSMIAGPE-----IDVSSVIENNQ 347
GD VVN ++SHP+ +A+ GI+ ++KLWTP +N +++ PE ++++ V +Q
Sbjct: 395 GDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSN--DVLSLPEKIDKVMELNRVGREDQ 452
Query: 348 RKLSRNREILLPFEFLERFRMHEFGE 373
+++ ++++ L+R + F E
Sbjct: 453 SRVTLTPDVIMHVLRLQRRQTSAFTE 478
>AT4G38480.1 | chr4:18003957-18006002 FORWARD LENGTH=472
Length = 471
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 243 QRYVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQ 302
Q Y H N T +K +F G + E++ SGSD GR FIW K+ G L++ + D VVNCI+
Sbjct: 301 QVYKEHTNRET-VKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGELLRAMEADRHVVNCIE 359
Query: 303 SHPYDCAVATSGIDNTIKLWTPDANATSMIAG 334
SHP+ + +SGID IK+WTP + G
Sbjct: 360 SHPHMPLMCSSGIDTDIKIWTPGGTEKPLSPG 391
>AT4G35140.1 | chr4:16723873-16726477 REVERSE LENGTH=497
Length = 496
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 245 YVAHCNVGTDIKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQSH 304
Y H N T +K +F G + E++ SGSD GR FIW K+ G LI+++ D VVNCI+ H
Sbjct: 327 YKGHKNCET-VKGVNFFGPRSEYVVSGSDCGRIFIWRKKGGELIRVMEADRHVVNCIEPH 385
Query: 305 PYDCAVATSGIDNTIKLWTPDA 326
P+ +A+SGI++ IK+WT A
Sbjct: 386 PHIPVLASSGIESDIKVWTSKA 407
>AT5G08560.1 | chr5:2771104-2773827 REVERSE LENGTH=590
Length = 589
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 255 IKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQSHPYDC-AVATS 313
I ++ F G + FIASGS+D + +IW + TG+LI L G VNC+ P + +A++
Sbjct: 491 IIRSCFGGYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASA 550
Query: 314 GIDNTIKLWTPD 325
D TI++W D
Sbjct: 551 SDDGTIRIWGLD 562
>AT5G43920.1 | chr5:17673397-17675630 FORWARD LENGTH=524
Length = 523
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 255 IKQASFLGEQGEFIASGSDDGRWFIWEKRTGRLIKMLAGDGAVVNCIQSHPYDC-AVATS 313
+ ++ F G FIASGS+D + +IW + + +++L+G VNC+ +P + +A++
Sbjct: 445 VIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASA 504
Query: 314 GIDNTIKLWTP 324
D TI++W P
Sbjct: 505 SDDQTIRIWGP 515
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,050,358
Number of extensions: 327616
Number of successful extensions: 1595
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1600
Number of HSP's successfully gapped: 7
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)