BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0185600 Os03g0185600|J100059H23
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64816.1  | chr5:25913487-25913879 FORWARD LENGTH=131          191   1e-49

>AT5G64816.1 | chr5:25913487-25913879 FORWARD LENGTH=131
          Length = 130

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 99/102 (97%)

Query: 19  GQAFRVKRRRDEEQRLKAARGREKSSDEVFVCERVCTSKRMLKKVGAFSKDPIPETCVTV 78
           GQA+R+K+R  EE+R+K+ARGREKSSDE+FVCERVCTSKRMLKKVGAFSKDPIP+TCVTV
Sbjct: 19  GQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTV 78

Query: 79  CGVSELDACADACARTVCVNQHQVPNWNDVCLKRCQSECLKL 120
           CGVSELDAC+DACARTVCVNQHQV NWND+CL+RCQSECLKL
Sbjct: 79  CGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,421,971
Number of extensions: 91225
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 105 (45.1 bits)