BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0185500 Os03g0185500|AK106310
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34310.1  | chr4:16414113-16419542 FORWARD LENGTH=1229         441   e-124

>AT4G34310.1 | chr4:16414113-16419542 FORWARD LENGTH=1229
          Length = 1228

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/265 (76%), Positives = 233/265 (87%), Gaps = 1/265 (0%)

Query: 2    DVVFVHGLRGGPFNSWRIADDKSSTTKAGLVESIDEDAGKEGTCWPREWLSADFPQARFL 61
            DV+F+HGLRGGPF +WRIA+DKSST K+GLVE ID++AGK GT WP EWLS DFPQAR  
Sbjct: 954  DVIFLHGLRGGPFKTWRIAEDKSST-KSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLF 1012

Query: 62   TVKYKTNLTQWTGASLPLQEVSSMLLRKLIAAGIGSRPVVFVTHSMGGLVVKQMLYQAKL 121
            T+KYKTNLT+W+GASLPLQEVSSM+L KL++AGIG RPVVFVTHSMGGLVVKQ+L++AK 
Sbjct: 1013 TLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKE 1072

Query: 122  NNYDKFLNNTNGLVFYSCPHFGSRLADMPWRMGLVFRPAPSIGELRSGSPRLVELNDFVR 181
               DK +NNT G+VFYSCPHFGS+LADMPWRMGLV RPAPSIGELRSGSPRLVELND +R
Sbjct: 1073 EKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPRLVELNDLLR 1132

Query: 182  QRHSKGLLNVLSFSETQVTPIVEGYGGWALRMEIVPIESAYPGYGELVVLASTDHINSCK 241
            Q H KG++ VLSF ET+VTPIVEGYGGWA RMEIVPIESAYPG+GELVVL STDHINSCK
Sbjct: 1133 QLHKKGVVEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCK 1192

Query: 242  PVNKNDPSYADTLAFLEKILKSRLK 266
            P++++DPSY + L FL K+   RLK
Sbjct: 1193 PLSRSDPSYTEALQFLRKLSAQRLK 1217



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,053,169
Number of extensions: 255015
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)