BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0184600 Os03g0184600|AK065264
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33360.1 | chr4:16067989-16069374 REVERSE LENGTH=345 145 4e-36
AT1G09490.1 | chr1:3064172-3065815 FORWARD LENGTH=323 55 9e-09
AT1G09480.1 | chr1:3057975-3060661 FORWARD LENGTH=370 55 1e-08
AT5G58490.1 | chr5:23643068-23644455 FORWARD LENGTH=325 52 1e-07
AT1G09510.1 | chr1:3069396-3070812 FORWARD LENGTH=323 49 5e-07
>AT4G33360.1 | chr4:16067989-16069374 REVERSE LENGTH=345
Length = 344
Score = 145 bits (367), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 87/103 (84%)
Query: 1 LQVNVRGLENVLKAAKRTPTVKKIIYTSSFFAIGPTDGYVADETQRHQEKTFCSEYEKSK 60
+ VNV GL+NVL+A K T TV+KIIYTSSFFA+G TDG VA+E Q H E+ FC+EYE+SK
Sbjct: 97 ISVNVGGLKNVLEAVKETKTVQKIIYTSSFFALGSTDGSVANENQVHNERFFCTEYERSK 156
Query: 61 VLADRIALQAAAEGVPITILYPGVIYGPGKLTTGNIVSRIVRE 103
+AD++AL AA+EGVPI +LYPGVI+GPGKLT+ N+V+R++ E
Sbjct: 157 AVADKMALNAASEGVPIILLYPGVIFGPGKLTSANMVARMLIE 199
>AT1G09490.1 | chr1:3064172-3065815 FORWARD LENGTH=323
Length = 322
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 5 VRGLENVLKAAKRTPTVKKIIYTSSFFA-------IGPTDGYVADETQRHQEKTFCSE-- 55
++G NVL K+ +VK++I TSS A IGP D + DET + + C E
Sbjct: 104 LKGTINVLNTCKQVSSVKRVILTSSTAAVLSRQPPIGPND--LVDET-FFSDPSLCRETK 160
Query: 56 --YEKSKVLADRIALQAAAE-GVPITILYPGVIYGPGKLTTGNIVSRIVREFLTHGYVKY 112
Y SK+LA+ A Q A + G+ + +L PG I GP T N+ ++ +F+ +G +
Sbjct: 161 NWYSLSKILAENAAWQFAKDNGIDMVVLNPGFICGPLLQPTLNMSVELIVDFI-NGKNPF 219
Query: 113 VVIYYR 118
YYR
Sbjct: 220 NKRYYR 225
>AT1G09480.1 | chr1:3057975-3060661 FORWARD LENGTH=370
Length = 369
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 5 VRGLENVLKAAKRTPTVKKIIYTSS----FFAIGPTDGY-VADETQRHQEKTFCSE---- 55
++G NVL K TP+V+++I TSS F P + V DET + + C E
Sbjct: 151 LKGTMNVLNTCKETPSVRRVILTSSTAAVLFRQPPVEASDVVDET-FFSDPSLCRETKNW 209
Query: 56 YEKSKVLADRIALQAAAE-GVPITILYPGVIYGPGKLTTGNIVSRIVREFLTHGYVKYVV 114
Y SK+LA+ A + A + G+ + +L PG I+GP T N ++ +F+ +G +
Sbjct: 210 YPLSKILAENAAWEFAKDNGIDMVVLNPGFIFGPLLQPTLNFSVELIVDFI-NGKNPFNS 268
Query: 115 IYYRIFVSI 123
+YR FV +
Sbjct: 269 RFYR-FVDV 276
>AT5G58490.1 | chr5:23643068-23644455 FORWARD LENGTH=325
Length = 324
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 1 LQVNVRGLENVLKAAKRTPTVKKIIYTSSFFAIGPTDGYVADETQRHQ---EKTFCSE-- 55
L V+G NVL AAK +VK+++ TSS AI P+ + AD+ + + + +C +
Sbjct: 102 LDPAVKGTINVLTAAKEA-SVKRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNG 160
Query: 56 --YEKSKVLADRIALQAAAE-GVPITILYPGVIYGP 88
Y SK LA++ A + A E G+ + ++ PG + GP
Sbjct: 161 LWYPLSKTLAEKAAWEFAEEKGLDVVVVNPGTVMGP 196
>AT1G09510.1 | chr1:3069396-3070812 FORWARD LENGTH=323
Length = 322
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 5 VRGLENVLKAAKRTPTVKKIIYTSSFFAI-------GPTDGYVADETQRHQEKTFCSE-- 55
V+G NVLK + +VK++I TSS A+ GP D + DE+ + FC+E
Sbjct: 104 VKGTLNVLKTCAKVSSVKRVIVTSSMAAVLFREPTLGPND--LVDESC-FSDPNFCTEKK 160
Query: 56 --YEKSKVLADRIALQAAAE-GVPITILYPGVIYGP 88
Y SK LA+ A + A E G+ + ++ PG++ GP
Sbjct: 161 LWYALSKTLAEDEAWRFAKEKGLDLVVINPGLVLGP 196
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,549,014
Number of extensions: 90955
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)