BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0183500 Os03g0183500|AK063042
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 64 3e-11
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 54 4e-08
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 52 2e-07
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 52 2e-07
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 50 4e-07
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 50 6e-07
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 49 1e-06
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 47 4e-06
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 47 5e-06
AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345 47 5e-06
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 81 FMGLGFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQMA 123
F GLGFLN CY C KKL+ D+F+Y+GE AFCS ECRS +A
Sbjct: 177 FQGLGFLNSCYLCRKKLHG-QDIFIYRGEKAFCSTECRSSHIA 218
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 79 RGFMGLGFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
R + GFL C+ C +KL D+++YKG+ AFCS ECRS+QM
Sbjct: 61 RCYQDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQM 104
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 84 LGFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
L FL C+ C+K+L+ D DV++Y+G+ FCS ECR QM
Sbjct: 40 LCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQM 78
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 84 LGFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
L FL C+ C+K+L+ D DV++Y+G+ FCS ECR QM
Sbjct: 40 LCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQM 78
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 76 PAGRGFMGLGFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
PA FL+ C+ C K L D+++Y+GE FCS+ECR Q+M
Sbjct: 210 PAMETKSTESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEM 256
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 85 GFLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
FL+CC C K L D+F+Y+G+ AFCS+ECRS +M
Sbjct: 221 SFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEM 258
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 86 FLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQMA 123
FL C C + L D+++Y+G+ AFCS+ECR +QMA
Sbjct: 89 FLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMA 126
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 80 GFMGLG---FLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
+ G G FL+ C+ C K+L + D+F+Y+G+ FCS ECR +Q+
Sbjct: 67 SYYGYGQPHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQI 112
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 80 GFMGLG---FLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
GF+G FL C C K L + D+F+Y+G+ AFCS ECR +Q+
Sbjct: 7 GFLGCEEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQI 52
>AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345
Length = 344
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 86 FLNCCYCCHKKLYADMDVFVYKGEHAFCSAECRSQQM 122
FL+ CY C KKL D+++Y G AFCS+ECRS+++
Sbjct: 271 FLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEI 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,763,998
Number of extensions: 84084
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 11
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)