BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0181800 Os03g0181800|AK070399
(573 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506 192 3e-49
AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749 147 2e-35
AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674 129 3e-30
AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519 108 1e-23
AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641 105 9e-23
AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511 100 2e-21
AT2G31920.1 | chr2:13574053-13576367 REVERSE LENGTH=586 85 1e-16
>AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506
Length = 505
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 156/257 (60%), Gaps = 11/257 (4%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MASLTP VL+K+L+ +N+++KV GEYRS+LLQVISIVPA+ GSELWP+ GFFIKVSDSSH
Sbjct: 1 MASLTPRVLIKLLETMNTNIKVRGEYRSVLLQVISIVPALAGSELWPNQGFFIKVSDSSH 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLMQ 120
STYVSLS EDNELIL+NKL +GQF YV+K+ + +GNPKDLMQ
Sbjct: 61 STYVSLSNEDNELILNNKLGIGQFFYVDKLDAGTPVPVLVGVRPISGRHPFVGNPKDLMQ 120
Query: 121 MSTP--TGISEALAHQRKATKSAELSESEKENSQRKVVIKEQKAVVASRYMLGISSNNSK 178
M P T E H +K A + E + VIKE+K VASRYM GIS++ +
Sbjct: 121 MLVPSETTPREEEYHNQKKKDGARSNIVENIRKHQPFVIKEEKTGVASRYMKGISNSKAS 180
Query: 179 ITNLNSSIDSDKSNGGSSICS--------ANQKSAPTKFKQESKPQERPNT-PSRSPAKI 229
++ +S +++ GS + + Q+ + +Q Q RP T P+++ K
Sbjct: 181 GSDSSSGGSNNEGETGSIMVAKKVGVLAKGKQREHKDQARQAGPLQCRPATAPTKAEPKK 240
Query: 230 VSAKQEINKDTRKTSAS 246
+S +N RK++++
Sbjct: 241 LSLSSTVNYINRKSNSA 257
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 143/256 (55%), Gaps = 21/256 (8%)
Query: 326 ETVSWDSLPTSLIKSVKVVARRKTIALVVXXXXXXXXXXXXSLLKGLGIFAEIRKSAE-E 384
E SW SLP SL K K + RR+ +A ++ L+K + +FAE+ +A +
Sbjct: 258 EDASWSSLPVSLSKLGKGMLRRRNLAALIAAEVQREALAASHLIKCISMFAELSSNASPK 317
Query: 385 DPHAAITKFFQLNRLIIQQSVFW---KDYSSEPVKESR--PEKEKPSRKASASQNKAVAG 439
+PH ++ FF L ++ Q V KD S +PV E EK S+KAS S ++A
Sbjct: 318 NPHTSLRNFFTLQSILDQVQVTVVASKDKSFQPVNIHSLWMEPEKLSKKASLSSSRA--- 374
Query: 440 STAKNSDDAYTSEKIDWAREDGFKEISRSWIILKKESQSWFLSFLEDALEAGFKFEGQNK 499
T K S +EK++W + +G +EI LK+E++SWFL FLEDAL+ G K
Sbjct: 375 -TMKPSKALTEAEKLEWVKGNGTEEIKELTNTLKRETRSWFLKFLEDALDTGLHATVPEK 433
Query: 500 NTRERVRGHSKGG-----DGQIAVRLSQLKETSNWLDQLHSEVDKSQDALVETIEQLKQK 554
+G +KG D IA LSQLK+ + WL+++ ++ S ++L+E IE+LK+K
Sbjct: 434 ------KGKTKGARLAEPDNHIAETLSQLKQANEWLEKVKNDNLSSDNSLLENIERLKKK 487
Query: 555 VYTCLLGTVETAASAL 570
+Y+CLL V++AASA+
Sbjct: 488 IYSCLLLYVDSAASAI 503
>AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749
Length = 748
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 93/119 (78%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MA+L PGVLLK+L+++N+DVK+ GE+RS LLQVISIVPA+ G EL+P+ GF++KVSDSSH
Sbjct: 1 MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGGELFPNQGFYLKVSDSSH 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLM 119
+TYVSL E ++LILS+K+QLGQ+I+V++V+SS C+G+P+D++
Sbjct: 61 ATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVPGRHPCVGDPEDIV 119
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 22/141 (15%)
Query: 427 RKASASQNK-AVAGSTAKNSDDAYTSEKIDWAREDGFKEISRSWIILKKESQSWFLSFLE 485
R+ S+SQ +VAGS S ++W + +G E + L+ SQ WFL F+E
Sbjct: 600 RENSSSQKATSVAGSE---------SPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVE 650
Query: 486 DALEAGFKFEGQNKNTRERVRGHSKGGDGQIAVRLSQLKETSNWLDQLHSEVDKS--QDA 543
L+A S +GQIA LSQLK ++WLD++ S+ D+ Q+
Sbjct: 651 RFLDADVITSSS----------LSLSDNGQIAGMLSQLKSVNDWLDEIGSKEDEEGLQEV 700
Query: 544 LVETIEQLKQKVYTCLLGTVE 564
ETI++L++K+Y LL VE
Sbjct: 701 SKETIDRLRKKIYEYLLTHVE 721
>AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674
Length = 673
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 84/119 (70%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MASL PG+LLK+L+ +NS + G++RS +LQV IVPA+ GS+LWP+ GF++++SDS +
Sbjct: 1 MASLAPGILLKLLQCMNSGTRPTGDHRSAILQVTGIVPALAGSDLWPNQGFYVQISDSLN 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLM 119
STYVSLS+ D +LILSN+LQLGQFIY+E+++ + +G P+ L+
Sbjct: 61 STYVSLSERDTDLILSNRLQLGQFIYLERLEFATPVPRAAGIRPVAGRHAFVGKPEPLI 119
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 16/109 (14%)
Query: 456 WAREDGFKEISRSWIILKKESQSWFLSFLEDALEAGFKFEGQNKNTRER-VRGHSKGGDG 514
W DG KE ++ + L+ E Q WF+ F+E++L+ NKN +R + G S
Sbjct: 570 WTDLDGLKETAKFAVNLQSEMQVWFIEFVEESLD--------NKNAAKRSLDGSS----- 616
Query: 515 QIAVRLSQLKETSNWLDQLHSEVDKSQDALVETIEQLKQKVYTCLLGTV 563
IA LSQLK+ + WLD++ S +++ ++ IE+LK+K+Y ++ V
Sbjct: 617 -IAAVLSQLKQVNEWLDRVSSN-QENKITTMDKIERLKRKIYGFVIHHV 663
>AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519
Length = 518
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPA-ITGSELWPDHGFFIKVSDSS 59
MA+L PG+L K++ + + VK GE+RS LLQV IVP + L P GFFIKVSDSS
Sbjct: 1 MAALAPGILQKLIDGMKTGVKPTGEHRSSLLQVTDIVPIDLDEKNLLPKQGFFIKVSDSS 60
Query: 60 HSTYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLM 119
HS YVSL + ++ +LSNK+QLGQFIYV+++ +G P+ LM
Sbjct: 61 HSIYVSLPSDQDDDVLSNKMQLGQFIYVDRLDPGTPVPIIKGARPIPGRHPLLGTPEPLM 120
>AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641
Length = 640
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 1 MASLTPGVLLKVLKNIN-SDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSS 59
MA L GVL K+L+ + V+ ++R +LLQ+ I+P + LWP+ GFF++++DS+
Sbjct: 29 MAELRSGVLFKLLEEMGVGKVRRDVDHRPVLLQIRCIIPVLAAGGLWPNKGFFLRITDST 88
Query: 60 HSTYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLM 119
HS YVSL +E+N+L+L +KLQ+GQ I+VEK++ + C G+P DL+
Sbjct: 89 HSIYVSLPREENDLVLYDKLQIGQLIFVEKLEFAYPVPMIKGIRPTPGRRACTGDPIDLI 148
>AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511
Length = 510
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPA-ITGSELWPDHGFFIKVSDSS 59
MA+L PG+L K+++ + + +K E+RS +LQV IVP + L P GF IK+SDSS
Sbjct: 1 MAALAPGILQKLIQGMKTGIKPTREHRSSMLQVTDIVPIDLDEKSLEPKQGFLIKISDSS 60
Query: 60 HSTYVSLSKEDNELILSNKLQLGQFIYVEKVQ 91
HS YVSL + ++++LSNKLQLGQFIYV++++
Sbjct: 61 HSIYVSLPSDQDDVVLSNKLQLGQFIYVDRLE 92
>AT2G31920.1 | chr2:13574053-13576367 REVERSE LENGTH=586
Length = 585
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 1 MASLTPGVLLKVLK----NINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVS 56
MASLTPGVL +L N S + +RS LLQVI IVP ++ + W FF+KVS
Sbjct: 1 MASLTPGVLSNLLNIAAGNSPSSPPLLSSHRSPLLQVIEIVPCLSDDQ-WRSEAFFVKVS 59
Query: 57 DSSHSTYVSLSK-EDNELILSNKLQLGQFIYV---EKVQSSIXXXXXXXXXXXXXXXXCI 112
DS H+ YV++S +D +LI S+++QLGQFIY+ V+ C+
Sbjct: 60 DSLHAAYVAVSTGDDADLIRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPVPKRRMCV 119
Query: 113 GNPKDL 118
GNP DL
Sbjct: 120 GNPSDL 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.124 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,813,557
Number of extensions: 372450
Number of successful extensions: 1687
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 11
Length of query: 573
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,255,305
Effective search space: 3871738045
Effective search space used: 3871738045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)