BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0181100 Os03g0181100|AK120087
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254 73 1e-13
AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250 67 7e-12
AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188 59 1e-09
AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239 59 2e-09
AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198 53 8e-08
>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
Length = 253
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 31/122 (25%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAA-------------------------- 108
LTIFY G+++VF DF A+KA EV+ +AS G A +
Sbjct: 127 LTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTT 186
Query: 109 ---PAQREGAALADMPIMRKASLQRFFAKRKDRLAATTPYARPSPAETKASEPEEKKTPT 165
P Q L ++PI R+ASL RF KRKDR+ + PY PA KAS +
Sbjct: 187 TQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPA--KASSNPQTTGNM 244
Query: 166 SW 167
SW
Sbjct: 245 SW 246
>AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250
Length = 249
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 38/109 (34%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAA-------------------------- 108
LTIFYGGR++VF+DF A+KA EV+ +A+ G A +
Sbjct: 120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNP 179
Query: 109 -----------PAQREGAALA-DMPIMRKASLQRFFAKRKDRLAATTPY 145
P Q A+LA ++PI R+ASL RF KRKDR+ + PY
Sbjct: 180 VCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPY 228
>AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188
Length = 187
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 35/106 (33%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGM----------AAAPAQREGAAL------- 117
LTIF+GG + VF+ P++K E++R+A+ M ++PA +
Sbjct: 58 LTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPALNRAPSFSSTSNVA 117
Query: 118 ------------------ADMPIMRKASLQRFFAKRKDRLAATTPY 145
AD+PI R+ SLQRF KR+DRL PY
Sbjct: 118 SPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPY 163
>AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239
Length = 238
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAA--------APAQREGAAL--------- 117
LTI +GG VF+ PA+K E++ +A++ A PA + +
Sbjct: 132 LTIIFGGSFSVFDGIPAEKVQEILHIAAAAKATETINLTSINPALKRAISFSNASTVACV 191
Query: 118 --ADMPIMRKASLQRFFAKRKDRLAATTPY-ARPSPAETKASEP 158
AD+PI R+ SLQRFF KR+ R T PY A S A+ + P
Sbjct: 192 STADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNETSP 235
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSG------MAAAPAQREG---AALADMPIMRK 125
LTI +GG VF PA K E++R+A +G PA + +AD+PI R+
Sbjct: 46 LTIIFGGSCRVFNGVPAQKVQEIIRIAFAGKQTKNVTGINPALNRALSFSTVADLPIARR 105
Query: 126 ASLQRFFAKRKDR 138
SLQRF KR+DR
Sbjct: 106 RSLQRFLEKRRDR 118
>AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198
Length = 197
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 25/92 (27%)
Query: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQRE--------------------G 114
+TIFY G + VF+ +KA E+M++A+ AA + E G
Sbjct: 105 MTIFYNGSVSVFQ-VSRNKAGEIMKVANE---AASKKDESSMETDLSVILPTTLRPKLFG 160
Query: 115 AAL-ADMPIMRKASLQRFFAKRKDRLAATTPY 145
L D+PI R+ SLQRF KRK+RL +T+PY
Sbjct: 161 QNLEGDLPIARRKSLQRFLEKRKERLVSTSPY 192
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,261,200
Number of extensions: 62223
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 6
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)