BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0174900 Os03g0174900|Y10905
(239 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309 148 3e-36
AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329 137 7e-33
AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309 132 2e-31
AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342 130 7e-31
AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304 125 2e-29
AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191 121 4e-28
AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273 114 5e-26
AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199 113 8e-26
AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296 101 3e-22
AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270 101 4e-22
>AT3G14020.1 | chr3:4642968-4644301 FORWARD LENGTH=309
Length = 308
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 130/214 (60%), Gaps = 11/214 (5%)
Query: 6 LTENGTV-----MIQFGHKMPDYESSATQSTSG-SPREVSGMSEGSLNE-QNDQSGNLDG 58
LT+N T+ M Q G +M Y+SS+TQST G S EV+ +SE + N +L G
Sbjct: 34 LTDNNTLSLTMEMKQTGFQMQHYDSSSTQSTGGESYSEVASLSEPTNRYGHNIVVTHLSG 93
Query: 59 YTKSDEGKMMS-ALSLGKSETVYAHSEPDRSQPFGISYPYADSFYGGAVATYGTHAIMHP 117
Y ++ E + S ++S ++V E G P+ + F A+ H + HP
Sbjct: 94 YKENPENPIGSHSISKVSQDSVVLPIEAASWPLHGNVTPHFNGFLSFPYAS--QHTVQHP 151
Query: 118 QIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHES 177
QI G++ S R+PLP EPI+VNAKQY AILRRR+ RAKLEA+NKL+K RKPYLHES
Sbjct: 152 QIRGLVPS-RMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHES 210
Query: 178 RHQHAMKRARGTGGRFLNTKQQPEASDGGTPRLV 211
RH HA+KR RG+GGRFLNTK+ E++ +P +
Sbjct: 211 RHLHALKRVRGSGGRFLNTKKHQESNSSLSPPFL 244
>AT1G17590.1 | chr1:6050481-6051984 REVERSE LENGTH=329
Length = 328
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 90/125 (72%), Gaps = 11/125 (8%)
Query: 82 HSEPDRSQPFGISYPYADSFYGGAV-ATYGTHA-IMHPQIVGVMSSSRVPLPIEPATEEP 139
HS P ++ S+ YAD +GG + A Y A I +PQ+ +RVPLP + EP
Sbjct: 123 HSSPSKA---NFSFHYADPHFGGLMPAAYLPQATIWNPQM------TRVPLPFDLIENEP 173
Query: 140 IYVNAKQYHAILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQ 199
++VNAKQ+HAI+RRRQ RAKLEA+NKL+K RKPYLHESRH HA+KR RG+GGRFLNTK+
Sbjct: 174 VFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKL 233
Query: 200 PEASD 204
E++D
Sbjct: 234 QESTD 238
>AT1G54160.1 | chr1:20217581-20218706 REVERSE LENGTH=309
Length = 308
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Query: 113 AIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRRRQLRAKLEAENKLVKNRKP 172
A+ H +++G++SS RVPLP EPI+VNAKQYHAILRRR+ RAKLEA+NKL+K RKP
Sbjct: 154 ALPHLEMMGLVSS-RVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKP 212
Query: 173 YLHESRHQHAMKRARGTGGRFLNTKQQPEASD 204
YLHESRH HA+KRARG+GGRFLNTK+ E+S+
Sbjct: 213 YLHESRHLHALKRARGSGGRFLNTKKLQESSN 244
>AT1G72830.2 | chr1:27405699-27407088 REVERSE LENGTH=342
Length = 341
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 4/120 (3%)
Query: 93 ISYPYADSFYGGAVA-TYGTHA-IMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAI 150
S+ YAD YGG +A TY A +PQ+V M RVPLP E +P++VNAKQYHAI
Sbjct: 133 FSFHYADPHYGGLLAATYLPQAPTCNPQMVS-MIPGRVPLPAELTETDPVFVNAKQYHAI 191
Query: 151 LRRRQLRAKLEAENKLVKNRK-PYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGGTPR 209
+RRRQ RAKLEA+NKL++ RK PYLHESRH HA+KR RG+GGRFLNTK+ + S+ R
Sbjct: 192 MRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 251
>AT3G20910.1 | chr3:7326495-7328369 FORWARD LENGTH=304
Length = 303
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 75/104 (72%), Gaps = 4/104 (3%)
Query: 91 FGISYPYADSFYGGAVATYGTHAI-MHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHA 149
+ S PY D +Y G + YG H + P G M SR+PLP E A +EP++VNAKQY A
Sbjct: 121 WASSNPYQDPYYAGVMGAYGHHPLGFVP--YGGMPHSRMPLPPEMA-QEPVFVNAKQYQA 177
Query: 150 ILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRF 193
ILRRRQ RAK E E KL+K+RKPYLHESRHQHAM+R RGTGGRF
Sbjct: 178 ILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF 221
>AT1G30500.2 | chr1:10804736-10805896 REVERSE LENGTH=191
Length = 190
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 3/108 (2%)
Query: 95 YPYADSFYGGAVATYGT-HAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILRR 153
YPY D +Y A + +H Q++GV VPLP + A EEP++VNAKQYH ILRR
Sbjct: 58 YPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQG-VPLPSD-AVEEPVFVNAKQYHGILRR 115
Query: 154 RQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPE 201
RQ RA+LE++NK++K+RKPYLHESRH HA++R RG GGRFLN K++ E
Sbjct: 116 RQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDE 163
>AT5G12840.1 | chr5:4051147-4052961 REVERSE LENGTH=273
Length = 272
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 93 ISYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEPIYVNAKQYHAILR 152
+ PY D +YGG + YG + +G M R LP++ A +EP+YVNAKQY ILR
Sbjct: 129 VPNPYQDPYYGGLMGAYGHQQLGFRPYLG-MPRERTALPLDMA-QEPVYVNAKQYEGILR 186
Query: 153 RRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQPEASDGG 206
RR+ RAK E E K++++RKPYLHESRH+HAM+RAR +GGRF + D G
Sbjct: 187 RRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAG 240
>AT2G34720.1 | chr2:14650018-14651255 REVERSE LENGTH=199
Length = 198
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 10/111 (9%)
Query: 95 YPYADSFYGGAVATYGTHAIMHP------QIVGVMSSSRVPLPIEPATEEPIYVNAKQYH 148
YPY D +Y A + HP Q++G M VPL + A EEP++VNAKQYH
Sbjct: 53 YPYPDPYYRSVFAQQAY--LPHPYPGVQLQLMG-MQQPGVPLQCD-AVEEPVFVNAKQYH 108
Query: 149 AILRRRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTKQQ 199
ILRRRQ RAKLEA N+ +K +KPY+HESRH HA++R RG GGRFLN K++
Sbjct: 109 GILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKE 159
>AT3G05690.1 | chr3:1676922-1678324 REVERSE LENGTH=296
Length = 295
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 70/115 (60%), Gaps = 18/115 (15%)
Query: 90 PFGISYPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEEP-IYVNAKQYH 148
P YPY + Y G V+ YG S SRV LP+ TE+ IYVN+KQYH
Sbjct: 100 PIYTKYPYGEQQYYGVVSAYG-------------SQSRVMLPLNMETEDSTIYVNSKQYH 146
Query: 149 AILRRRQLRAKLEA---ENKLV-KNRKPYLHESRHQHAMKRARGTGGRFLNTKQQ 199
I+RRRQ RAK A + KL + RKPY+H SRH HA++R RG+GGRFLNTK Q
Sbjct: 147 GIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQ 201
>AT5G06510.1 | chr5:1985439-1986591 FORWARD LENGTH=270
Length = 269
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 16/105 (15%)
Query: 95 YPYADSFYGGAVATYGTHAIMHPQIVGVMSSSRVPLPIEPATEE--PIYVNAKQYHAILR 152
+P+ + +YG V+ YG+ SS RV +P++ TEE IYVN+KQYH I+R
Sbjct: 100 HPHVEQYYG-VVSAYGSQ----------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIR 148
Query: 153 RRQLRAKLEAENKLVKNRKPYLHESRHQHAMKRARGTGGRFLNTK 197
RRQ RAK E KL + RKPY+H SRH HAM+R RG+GGRFLNTK
Sbjct: 149 RRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK 190
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,039,847
Number of extensions: 204441
Number of successful extensions: 468
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 10
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)