BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0169400 Os03g0169400|AK068500
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14205.1  | chr1:4855582-4856762 FORWARD LENGTH=166            179   7e-46
AT1G48350.1  | chr1:17867269-17868215 FORWARD LENGTH=171           70   5e-13

>AT1G14205.1 | chr1:4855582-4856762 FORWARD LENGTH=166
          Length = 165

 Score =  179 bits (454), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 98/121 (80%)

Query: 54  ARHGARKENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQK 113
           AR   R E+PK RNRR +KKF GT TKPRLSVFCS++QLYAMLVDD N+K LFY STLQK
Sbjct: 45  ARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQK 104

Query: 114 AICGDPPCGAVEAAGRVGEELIRACKELDITEISSYDRNGFARGEKMMAFEVPVSQYGFL 173
           +I GDPPC  +EAA RVGEELI+A  +L I EISSYDRNG  RGE+M AFE+ ++Q+GFL
Sbjct: 105 SIRGDPPCTVIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

Query: 174 P 174
           P
Sbjct: 165 P 165



>AT1G48350.1 | chr1:17867269-17868215 FORWARD LENGTH=171
          Length = 170

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 54  ARHGARKENPKVRNRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNRKILFYGSTLQK 113
           A+     E+   R+ R++KK NGT  +PRL VF SN+ LY  ++DD     L   ST QK
Sbjct: 48  AKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQK 107

Query: 114 AICG--DPPCG-AVEAAGRVGEELIRACKELDITEISSYDRNGFARGEKMMAFEVPVSQY 170
            I    D   G  +E A +VGE + ++C E  IT++ ++DR G+    ++ A      ++
Sbjct: 108 PISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAAREH 166

Query: 171 GF 172
           G 
Sbjct: 167 GL 168



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,107,112
Number of extensions: 110866
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)