BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0168300 Os03g0168300|AK069941
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39530.1  | chr5:15826285-15827517 REVERSE LENGTH=240          180   6e-46
AT5G39520.1  | chr5:15823920-15825416 REVERSE LENGTH=231          171   6e-43

>AT5G39530.1 | chr5:15826285-15827517 REVERSE LENGTH=240
          Length = 239

 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 125/190 (65%), Gaps = 1/190 (0%)

Query: 84  TFSYRFNTDIPMTETPGASIDEYLQNRPRIVGAVFPDKRKRTKLSDEEWSVQLLPIQFLF 143
           T+S R +TDIP+ E+P A  DEYL+++ R+  A+FPDK +  +L++EEW +Q+LPI FLF
Sbjct: 46  TYSSRLSTDIPLNESPQALFDEYLEDKSRVFEAMFPDKPRSHRLNEEEWRIQMLPINFLF 105

Query: 144 LSASPVIVMRFVSKSGGKEYPPHVPVKATSLLLMEVTDYKLDGLDSNAMPSHLALTVRGS 203
           L+  PV+ MR   KS G++YPP VP+  T +L + +  +KL GLD    P+  +L V+G+
Sbjct: 106 LTVWPVVDMRLRCKSNGQDYPPDVPLDITKVLELNMMRWKLQGLDRVMEPADFSLEVKGA 165

Query: 204 LYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFDNGLA 262
           LYP   G+ + LRG +EM++ F LPPVL LVPE V R +   VL  L   MK   +  L 
Sbjct: 166 LYPDRRGKHTRLRGQLEMNISFVLPPVLELVPEDVRRNLANAVLTGLVENMKHKVNGSLL 225

Query: 263 ADFKRYRREK 272
           +D+ R++ E+
Sbjct: 226 SDYSRFKNER 235



>AT5G39520.1 | chr5:15823920-15825416 REVERSE LENGTH=231
          Length = 230

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 128/204 (62%), Gaps = 1/204 (0%)

Query: 70  KSKSKEKINPRDMFTFSYRFNTDIPMTETPGASIDEYLQNRPRIVGAVFPDKRKRTKLSD 129
           + + K  ++P     +S + +TDI + E+P A  DEYL+++ R+  A+FPDK K  +L++
Sbjct: 24  RWRVKCHLSPVKSAKYSSKISTDIALHESPQALFDEYLEDKSRVFEAMFPDKPKNYRLNE 83

Query: 130 EEWSVQLLPIQFLFLSASPVIVMRFVSKSGGKEYPPHVPVKATSLLLMEVTDYKLDGLDS 189
           EEW +Q+LPI+F FL+A PV+VMR   KS G++YP  VP+  T +L + +T ++L GLD 
Sbjct: 84  EEWRIQMLPIKFFFLTACPVVVMRIRCKSNGQDYPSDVPLHITKVLELNMTKWELQGLDR 143

Query: 190 NAMPSHLALTVRGSLYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQ 248
              P+   L V+G+LYP   GR + L+G +E ++ F LP VLALVPE V R +   +L  
Sbjct: 144 VMEPTDFTLGVKGALYPDRRGRHTRLKGRLETTISFVLPSVLALVPEDVRRNMANAILAG 203

Query: 249 LALQMKQDFDNGLAADFKRYRREK 272
           L   MK      L AD+ +++ E+
Sbjct: 204 LVDNMKHRVIESLVADYSKFKYER 227



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,172,502
Number of extensions: 262459
Number of successful extensions: 600
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)