BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0155000 Os03g0155000|Os03g0155000
(285 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407 170 8e-43
AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408 157 7e-39
AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423 112 2e-25
AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440 81 6e-16
AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428 80 1e-15
AT5G67030.1 | chr5:26753745-26757090 REVERSE LENGTH=668 49 3e-06
>AT5G05320.1 | chr5:1575093-1576679 REVERSE LENGTH=407
Length = 406
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 74/315 (23%)
Query: 39 KSGPHEIRRVKRNFLRETLENELPEGTIRFSSKIVSTGEDSNVKLLHLADGST------I 92
+S +E+R V+R L + L ELP+GTIRFSSK+V + K++HL+DG+ +
Sbjct: 95 ESEEYEVRCVQRKLLLDALAGELPQGTIRFSSKLVHIELSGHYKMVHLSDGTILKTKVLV 154
Query: 93 GADRMRRRELGGGEVAWPAKANPLRA------------LGHQGPRRV------------- 127
G D ++ +G W NP++ GH+ RR
Sbjct: 155 GCDGVKS-VVG----KWLGFKNPVKTSRVAIRGIAHFQTGHELGRRFFQFYGNGVRSGFI 209
Query: 128 ---------------PDGDAEESVAKMRSYVLAKAARIP-----------------APLR 155
D D + K++ +VL K +P PL
Sbjct: 210 SCDQNTVYWFLTHTSTDLDKKNH-QKIKQFVLTKIKDLPDNIKSILETTDLDSLVMNPLM 268
Query: 156 FRSPLALVRGSISRGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLA----- 210
+R P L+ +I++ NVCVAGDA HP TP++GQGGC+A+EDGV+LARCL EA A
Sbjct: 269 YRPPWELLWANIAKDNVCVAGDALHPMTPDIGQGGCSAMEDGVILARCLGEAMKAKNMKG 328
Query: 211 DGAEHDPGYEAVTVALEKYAEERRWRGIRLITAAYVVGFIQQSTNPVIKFLREKFLSGLL 270
+ + + Y + L+KYA R+WR I LIT +Y VGFIQQS + R+KF+S L
Sbjct: 329 ETEDENESYRRIEDGLKKYAGSRKWRSIDLITTSYTVGFIQQSRGKWMTLFRDKFMSSFL 388
Query: 271 AKTMIAMADYDCGKL 285
+ + + ++CG+L
Sbjct: 389 SWLRVKKSHFNCGRL 403
>AT4G38540.1 | chr4:18023187-18024827 FORWARD LENGTH=408
Length = 407
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 155/316 (49%), Gaps = 74/316 (23%)
Query: 39 KSGPHEIRRVKRNFLRETLENELPEGTIRFSSKIVSTGEDSNVKLLHLADGSTIGADRMR 98
+S +E R V+R L E L ELPE TIRFSSK+V K +HL+DG+ ++
Sbjct: 95 ESEEYESRCVQRKLLLEALAGELPEETIRFSSKVVHIELSGCYKKVHLSDGTI-----LK 149
Query: 99 RRELGGGEVA------WPAKANP-------LRALGH----------------QGPRR--V 127
+ L G + W NP +R L H G R +
Sbjct: 150 TKVLVGCDGVYSVVGKWLGFKNPATTARLAIRGLTHFPEGHGFGKRFFQFYGDGVRSGFI 209
Query: 128 P---------------DGDAEESVAKMRSYVLAKAARIP-----------------APLR 155
P D D E + ++ +VL K +P + L+
Sbjct: 210 PCDHNTVYWFLTHTSTDIDEETNSEILKEFVLNKIKDLPENIKNVVETTDLDSMVMSQLK 269
Query: 156 FRSPLALVRGSISRGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLADGAE- 214
+R P L+ +I++ NVCVAGDA HP TP++GQGGC+A+EDGV+LARCL EA A +
Sbjct: 270 YRPPWELLWSNITKDNVCVAGDALHPMTPDIGQGGCSAMEDGVILARCLGEAIKAKSLKG 329
Query: 215 -----HDPGYEAVTVALEKYAEERRWRGIRLITAAYVVGFIQQSTNPVIKFLREKFLSGL 269
+ GY+ + L+KYA ER+WR I LIT AY VGFIQQS + R++FLS
Sbjct: 330 ETEENEEEGYKRIEEGLKKYAGERKWRSIDLITTAYTVGFIQQSRGKWMNMFRDRFLSSY 389
Query: 270 LAKTMIAMADYDCGKL 285
L++ ++ + +DCG L
Sbjct: 390 LSRMLLKKSHFDCGSL 405
>AT4G15760.1 | chr4:8972785-8974548 REVERSE LENGTH=423
Length = 422
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 139/304 (45%), Gaps = 62/304 (20%)
Query: 44 EIRRVKRNFLRETLENELPEGTIRFSSKIVSTGEDSNV--KLLHLADGSTIGADRMRRRE 101
E R +KRN L E L + LP+GTIRF S IVS +D ++HLA+G++I A + +
Sbjct: 119 EARCIKRNDLVEALSDALPKGTIRFGSHIVSIEQDKTTLFPVVHLANGNSIKAKVLIGCD 178
Query: 102 LGGGEVAWPAKANPLRAL-------------GHQGPR-------------RVP------- 128
V+ + NP +A GH P+ R+P
Sbjct: 179 GANSIVSDYLQLNPKKAFACRAVRGFTKYPNGHGFPQEVLRIKQGNVLIGRLPLTDNQVF 238
Query: 129 -----------DGDAEESVAKM-RSYV---------LAKAARIPA----PLRFRSPLALV 163
+G +ES+A + R + + K + + LR+R+P ++
Sbjct: 239 WFLVHMQDNNHNGKDQESIANLCRKWADDLSEDWKEMVKICNVESLTLTHLRYRAPSEIM 298
Query: 164 RGSISRGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLADGAE--HDPGYEA 221
G RG V VAGDA H P L QGG AALED VVLARCL+ D + D +
Sbjct: 299 LGKFRRGTVTVAGDAMHVMGPFLAQGGSAALEDAVVLARCLARKVGPDHGDLLKDCSMKN 358
Query: 222 VTVALEKYAEERRWRGIRLITAAYVVGFIQQSTNPVIKFLREKFLSGLLAKTMIAMADYD 281
+ A+++Y +ERR R + L Y+ G Q+++ V++ + L L + I YD
Sbjct: 359 IEEAIDEYVDERRMRLLGLSVQTYLTGRSLQTSSKVLRLMFIALLLLLFGRDQIRHTRYD 418
Query: 282 CGKL 285
CG+L
Sbjct: 419 CGRL 422
>AT2G35660.1 | chr2:14988499-14990320 FORWARD LENGTH=440
Length = 439
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 168 SRGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLADGAEHDPGYEAVTVALE 227
S+G V + GDA+HP TP LGQG C ALED VVLA L+ A + G E++ VA+E
Sbjct: 322 SKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAI-------NGGTESIEVAME 374
Query: 228 KYAEERRWRGIRLITAAYVVGFIQQSTNPVIKFLREKFLSGLLAKT--MIAMADYDCGKL 285
Y ER R L A +VG + Q NP++ +R + L + M+ +++C L
Sbjct: 375 SYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRNNIVIPKLLRLGPMLEHTNFECEPL 434
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 32 KSLRMKGKSGPHEIRRVKRNFLRETLENELPEGTIRFSSKIVSTGEDSN-VKLLHLADGS 90
+S + K E+R V+R L ETL ++LP TIRFSSK+ S ++N LL L DG+
Sbjct: 126 RSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGT 185
Query: 91 ------TIGADRMRRRELGGGEVAWPAKANPLRALGHQGPRRV---PDGDAEESVAKMRS 141
IG D +R + W + P + +GH R + P+G + K +
Sbjct: 186 RLLAQIVIGCDGIRSK-----VATWMGFSEP-KYVGHCAYRGLGFYPNG---QPFQKKVN 236
Query: 142 YVLAKAAR 149
Y+ K R
Sbjct: 237 YIYGKGIR 244
>AT2G29720.1 | chr2:12700592-12702289 REVERSE LENGTH=428
Length = 427
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 166 SISRGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLADGAEHDPGYEAVTVA 225
S S+G V + GDA+HP TP LGQG C ALED V+LA L+ A + G E+V A
Sbjct: 318 SASKGRVVLVGDAWHPMTPNLGQGACCALEDSVLLANKLASAI-------NGGTESVEGA 370
Query: 226 LEKYAEERRWRGIRLITAAYVVGFIQQSTNPVIKFLREKFLSGL 269
+E Y ER + RL A +VG + QS NP++ +R+ +S +
Sbjct: 371 MESYRSERWSQVFRLTVLANLVGKLLQSDNPLVCSVRDNIVSAM 414
>AT5G67030.1 | chr5:26753745-26757090 REVERSE LENGTH=668
Length = 667
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 169 RGNVCVAGDAFHPTTPELGQGGCAALEDGVVLARCLSEAFLADGAEHDPGYEAVTVALEK 228
+G V + GD+ H P +GQGGC A+ED LA L EA+ P V +L++
Sbjct: 365 KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETTTP--VDVVSSLKR 422
Query: 229 YAEERRWR 236
Y E RR R
Sbjct: 423 YEESRRLR 430
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,732,717
Number of extensions: 235203
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 8
Length of query: 285
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 188
Effective length of database: 8,447,217
Effective search space: 1588076796
Effective search space used: 1588076796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)