BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0147400 Os03g0147400|AK071480
(557 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503 632 0.0
>AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503
Length = 502
Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/556 (59%), Positives = 391/556 (70%), Gaps = 57/556 (10%)
Query: 1 MALAGTSKVVLGCVAFGIFWVLAVFPTVPFMPVGRTAGSLLGAMLMVLFRVISPEDAYAA 60
MA+A K+VLG VAF IFW+LAVFP+VPF+P+GRTAGSL GAMLMV+F+VI+PE AYAA
Sbjct: 1 MAMAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAA 60
Query: 61 IDLPIIGLLFGTMVVSIFLERADMFKYLGNLLSWKSRGSKDLLFRVCIVSAIASALFTND 120
IDLPI+GLLFGTMVVSI+LERADMFKYLG LLSWKSRG KDLL RVC+VSA++SALFTND
Sbjct: 61 IDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTND 120
Query: 121 TCCVVLTEFILKVARQNNLPPQPFLLALATSSNIGSAATPIGNPQNLVIAVESGISFGQF 180
T CVVLTEF+LK+ARQ NLPP PFLLALATS+NIGS+ATPIGNPQNLVIAV+S I F +F
Sbjct: 121 TSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEF 180
Query: 181 LLGVFPAMIVGVLTNAAILLCYFWKYLSVEK-DQEGGQPAGPEVVADDEVTSHRFTPARM 239
LLGVFPAMIVG+ NA +LL +W+ LS K D+E Q A EVVA ++V SHRF+PA
Sbjct: 181 LLGVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPATF 240
Query: 240 SHVSSLNPDDMDCISEPIIRSNSVRSTSANENLRSRSVNSEADIQLAIKSLRASSMSHEM 299
S VSS +S A E LR+R+ S+ E+
Sbjct: 241 SPVSS---------------EDSNLRMDAAETLRNRA---------------GSAGESEL 270
Query: 300 VEVSTVTDRRDEGASSRKFTRTASQQRSVIIEDSPPSPASNGDKEKEDEVAE-KRWRVFV 358
+ ++ R + S G+ + + + KRWR +
Sbjct: 271 ISCNSNASREQHNDAE-----------------------SQGESNNTNNMFQTKRWRRVL 307
Query: 359 WKTAVYLITLGMLIALLMGLNMSWXXXXXXXXXXXXDFTDAQACLEKVSYSLLIFFCGMF 418
WK++VY ITLGMLI+LLMGLNMSW DF DA+ LEKVSYSLLIFFCGMF
Sbjct: 308 WKSSVYFITLGMLISLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMF 367
Query: 419 ITVDGFNKTGIPNTLWELVEPYSRIDSAKGXXXXXXXXXXXSNVASNVPTVLLLGTRVAA 478
ITVDGFNKTGIP LW+L+EPY++ID AKG SNVASNVPTVLLLG RVAA
Sbjct: 368 ITVDGFNKTGIPTALWDLMEPYAKIDQAKGIAVLAVVILVLSNVASNVPTVLLLGARVAA 427
Query: 479 SAAAISHDSERKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQFFGYNLSFWSHLRF 538
S A+ + E+KAWL+LAWVSTVAGNLTLLGSAANLIVCEQARRA GY L+F H +F
Sbjct: 428 S--AMGREEEKKAWLLLAWVSTVAGNLTLLGSAANLIVCEQARRAVSHGYTLTFTKHFKF 485
Query: 539 GVPSTIVVTAIGLLIV 554
G+PST++VTAIGL ++
Sbjct: 486 GLPSTLIVTAIGLFLI 501
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,842,026
Number of extensions: 418967
Number of successful extensions: 1347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 2
Length of query: 557
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 453
Effective length of database: 8,255,305
Effective search space: 3739653165
Effective search space used: 3739653165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)