BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0146400 Os03g0146400|AK111974
(529 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538 728 0.0
AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560 250 1e-66
AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540 160 1e-39
AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537 67 3e-11
>AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538
Length = 537
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/485 (70%), Positives = 395/485 (81%), Gaps = 6/485 (1%)
Query: 51 PPSVPGEADQAPGETEPSTSSADEK----FVWRDHWYPVSLVEDLDPSVPTPFQLLNRDL 106
PPSVP E E+ F WRDHWYPVSLVEDLDP+VPTPFQLL RDL
Sbjct: 53 PPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDL 112
Query: 107 VIWKDPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPE 166
V+W D +W A DD CPHRLAPLSEGR+DE G LQCSYHGWSF G G+CTRIPQAA
Sbjct: 113 VLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATS 172
Query: 167 GPEAKAVRSPKACAIKFPTLVSQGLLFVWPDENGWEKATATKPPMLPKEFEDPAFSTVTI 226
GPEA+AV+SP+ACAIKFPT+VSQGLLFVWPDENGW++A + +PP LP +F+ P FSTVTI
Sbjct: 173 GPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVTI 232
Query: 227 QRDLYYGYDTLMENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGYSGSNSGNPRI 286
QRDL+YGYDTLMENVSDPSHI+FAHHKVTGRRDRA+PLPFK+ESSG WG+ G+N +PRI
Sbjct: 233 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRI 292
Query: 287 SATFVAPCYALNKIEIDTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMP 346
+A FVAPCY++NKIE+D KLPI G+QKWVIWICSFNIPMAPGKTRSIVCSARNFFQFS+P
Sbjct: 293 TAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVP 352
Query: 347 GKAWWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKES-SADINQQYTKITFTPTQ 405
G AWWQ+VPRWYEHWTSNLVYDGDMIVLQGQEK+FL+ S ES D+N+QYTK+TFTPTQ
Sbjct: 353 GPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQ 412
Query: 406 ADRFVLAFRAWLRKFGNSQPDWFGN-PSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAY 464
ADRFVLAFR WLR+ G SQP+WFG+ PS + LPSTVL+KR+MLDR++QHT CSSCKGAY
Sbjct: 413 ADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAY 472
Query: 465 NAFQTLQKVFMGATVAFCATAGIPADVQFRXXXXXXXXXXXXXXXXFYTLQKNFVFVDYV 524
N+FQ L+K +GATV + ATAG+P+DVQ R + +KNFVF DYV
Sbjct: 473 NSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAASAYALHEQEKNFVFRDYV 532
Query: 525 HAEID 529
H+EI+
Sbjct: 533 HSEIE 537
>AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560
Length = 559
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 233/480 (48%), Gaps = 85/480 (17%)
Query: 62 PGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALD 121
P E E +KF W +WYPV + DLD VP +++ DLV+W D +W +D
Sbjct: 65 PPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMD 124
Query: 122 DRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAI 181
D CPHRLAPLS+GRID+ G LQC YHGW F+GSG C IPQA P+GP + +AC
Sbjct: 125 DTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFK--QACVA 182
Query: 182 KFPTLVSQGLLFVWPDENGWEKAT--ATKPPMLPKEFEDPAFSTVTIQRDLYYGYDTLME 239
+P+ V +++ WP+ + K KPP +P E EDP+F+ + RD+ YGYD L+E
Sbjct: 183 VYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIP-ELEDPSFTKLMGNRDIPYGYDVLVE 241
Query: 240 NVSDPSHIEFAHH------KVTGR-------------------------RDRARPLPF-- 266
N+ DP+H+ +AH+ K G+ R+ +PL
Sbjct: 242 NLMDPAHVPYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINV 301
Query: 267 -KMESSG-----AWGYSGSNSGNPRISATFVAPCY------ALNKIEIDTKLPIFGDQKW 314
K+++ G WGYS F+APC L + E + P D+
Sbjct: 302 KKLDNKGFFSKQEWGYSN-----------FIAPCVYRSSTDPLPEQEHEYPAPAASDKAA 350
Query: 315 -------VIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWTSNLVY 367
+I+IC IP++PG++R I RNF F ++VPRW H N +
Sbjct: 351 LSKRRLSLIFIC---IPVSPGRSRLIWTFPRNFGVFID------KIVPRWVFHIGQNTIL 401
Query: 368 DGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAWLRKFGNSQPDW 427
D D+ +L +E+ L E+ + K F PT++D V+ FR W K+ ++ DW
Sbjct: 402 DSDLHLLHVEERKILERGPEN-------WQKACFIPTKSDANVVTFRRWFNKYSEARVDW 454
Query: 428 FGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTLQKVFMGATVAFCATAGI 487
G +LP T + ++ DRY H CSSCK A+ L+ + A+VA +
Sbjct: 455 RGKFDPFLLPPTP-PREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMAV 513
>AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540
Length = 539
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 209/460 (45%), Gaps = 76/460 (16%)
Query: 58 ADQAPGETEPSTSSADEKFV------WRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKD 111
+DQ G + + +EK V W + WYP+ L +++ P + +R +V++KD
Sbjct: 58 SDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKD 117
Query: 112 PKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAK 171
+ G +DRCPHRLA LSEG++ + G L+C YHGW F+G G C +IPQ K
Sbjct: 118 GE-GTLRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPASAKIPK 175
Query: 172 AVRSPKACAIKFPTLVSQGLLFVWPDENGWEKATATKPPMLP--KEFEDPAFSTVTIQRD 229
A AC + SQG+++VW T P LP + F P F ++ +
Sbjct: 176 A-----ACVKTYEVKDSQGVVWVW-----MSTKTPPNPEKLPWFENFARPGFFDISTTHE 225
Query: 230 LYYGYDTLMENVSDPSHIEFAHHKV--TGRRDRARPLPFKMESSGAWGYSGS-----NSG 282
L Y + L+EN+ DP+H+ +H + T +R+ A+PL F++ G++G+ G
Sbjct: 226 LPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGREKEGG 285
Query: 283 NPRISATFVAPCYALNKIEIDTKLPIFGDQKWV--IWICSFNIPMAPGKTRSIVCSARNF 340
F APC N E + K G + + +++C P GK+ IV
Sbjct: 286 KGSNLLRFDAPCVLQNNREFEGK---DGVKNYFSGLFLCR---PTGQGKSMLIV------ 333
Query: 341 FQFSMPGKA-WWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKI 399
+F + ++ ++P+W+ H + V++ DM L Q ++ + K + D+ Y +
Sbjct: 334 -RFGVTKRSPLVSVLPQWFWHQNACKVFEQDMGFLSSQNEVLMK-EKVPTKDL---YLNL 388
Query: 400 TFTPTQADRFVLAFRAWLRKFGNSQPDWFGN---------PSQEVLPSTVLSKR------ 444
+D +V +R W+ K G+ P FG+ P E P+ +++
Sbjct: 389 ----KSSDTWVAEYRKWMDKVGHGMPYHFGHRTISLPKVPPVVEHAPAGLIAALSASYPA 444
Query: 445 ----------EMLDRYEQHTLKCSSCKGAYNAFQTLQKVF 474
+ +RY +H + C SC +F+ + +
Sbjct: 445 KGGIGTMHAPNLANRYFRHIIHCRSCSNVIKSFELWKNIL 484
>AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537
Length = 536
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 134/344 (38%), Gaps = 46/344 (13%)
Query: 79 RDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDE 138
++ WYPV+ DL P + + VI++ + G+ + + C HR PL G ++E
Sbjct: 218 KNFWYPVAFTADLKHDTMVPIECFEQPWVIFRG-EDGKPGCVRNTCAHRACPLDLGTVNE 276
Query: 139 TGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWPDE 198
G +QC YHGW + G C ++P + + K P L +G++++WP +
Sbjct: 277 -GRIQCPYHGWEYSTDGECKKMP----------STKLLKVKIKSLPCLEQEGMIWIWPGD 325
Query: 199 NGWEKATATKPPMLPKEFEDPAFST-VTIQRDLYYGYDTLMENVSDPSHIEFAHHKVTGR 257
P+LP F + DL + L++N+ D +H F H +
Sbjct: 326 E-------PPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAK 378
Query: 258 RDRARPL-PFKMESSGAWGYSGSNSGNPRISATFVAPCYALNKIEIDT--KLPIFGDQKW 314
L F +SG GY I F PC L+ I I KL Q+
Sbjct: 379 GWSVPSLVKFLTPTSGLQGYWDPYP----IDMEFKPPCIVLSTIGISKPGKLEGKSTQQC 434
Query: 315 VIWICSFNI--PMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWTSNLVYDGDMI 372
+ ++ P + KTR + + +F P + + H+ ++ + +
Sbjct: 435 ATHLHQLHVCLPSSKNKTRLLYRMSLDF----APILKNLPFMEHLWRHFAEQVLNEDLRL 490
Query: 373 VLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAW 416
VL QE++ A+ I P D+ + +R W
Sbjct: 491 VLGQQERMLNGAN-------------IWNLPVAYDKLGVRYRLW 521
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,246,381
Number of extensions: 495123
Number of successful extensions: 961
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 5
Length of query: 529
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 426
Effective length of database: 8,282,721
Effective search space: 3528439146
Effective search space used: 3528439146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)