BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0143600 Os03g0143600|AK068424
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24010.1 | chr3:8676120-8678186 REVERSE LENGTH=235 137 4e-33
AT1G54390.2 | chr1:20304833-20306943 REVERSE LENGTH=329 57 1e-08
>AT3G24010.1 | chr3:8676120-8678186 REVERSE LENGTH=235
Length = 234
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
Query: 1 MGFLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSIT 60
M F E+F+A++ +L +LQ+ Y+L+R+LDKSLQ Q NEQRC++EIEDI+ G +G+IT
Sbjct: 1 MSFAEEFEANLVSLAHVLQKKYALLRDLDKSLQENQRQNEQRCEKEIEDIRRG-RAGNIT 59
Query: 61 YDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEE-LRQEKE 119
+ + KFS+EA++EQKH VRIADEKV LA Q YDLVD H+QQLDQ+M+K +E +R+EKE
Sbjct: 60 PNTSLTKFSEEALDEQKHSVRIADEKVTLAMQAYDLVDMHVQQLDQYMKKSDEVIRKEKE 119
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 61/68 (89%)
Query: 186 IDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYCPSCIG 245
+DL+LPVDPNEPTYC+CNQVS+GEMVACDNN CKIEW+HFGCVG+KE PKGKWYCP C
Sbjct: 167 MDLDLPVDPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPKGKWYCPECAT 226
Query: 246 FQKKRKGK 253
+K RKG+
Sbjct: 227 VKKSRKGR 234
>AT1G54390.2 | chr1:20304833-20306943 REVERSE LENGTH=329
Length = 328
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 189 ELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGKWYCPSCIGFQK 248
E P+DPNEPTYC+C+QVS+G+M+ACDN + + H + + +C SC K
Sbjct: 198 EQPIDPNEPTYCVCHQVSFGDMIACDNENVSLLSQHLIIYFLMYSCYDETFC-SCFDSAK 256
Query: 249 KRKG 252
+ G
Sbjct: 257 EVNG 260
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 3 FLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSITYD 62
+++D+ PA LQR + +RELD+ Q + Q+ + + + G+ +
Sbjct: 9 YVDDYLEYASTFPAELQRLLNTVRELDERSQSLINQTRQQTKYCLGLASQSSKKGNGNHY 68
Query: 63 PAKLKFSDEAIEE--------QKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKL-EE 113
+E IE+ Q++ + + EKV LA Q YDL+D+H+++LD+ + E+
Sbjct: 69 NNGGLDEEETIEKMRKEIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAED 128
Query: 114 LRQE 117
L+QE
Sbjct: 129 LKQE 132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,682,732
Number of extensions: 180226
Number of successful extensions: 626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 4
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)