BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0137300 Os03g0137300|AK120282
         (207 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20920.1  | chr2:8998728-8999789 FORWARD LENGTH=288            221   2e-58

>AT2G20920.1 | chr2:8998728-8999789 FORWARD LENGTH=288
          Length = 287

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 142/210 (67%), Gaps = 9/210 (4%)

Query: 1   AEGASFDDIMRAKNAVLASCKXXXXXXXXXXXXXXMLLMQSLSQRRAGKVVDNSIRYADV 60
           +EGASFD+I+RAK ++LAS K              MLLMQSL+QRRAGKVV N+IRYADV
Sbjct: 84  SEGASFDEILRAKKSILASRKDDPNAISQAEAAYDMLLMQSLNQRRAGKVVSNNIRYADV 143

Query: 61  KPVKSAGSGTVPQWMQATMKNAPVTFEAPSSSSLGIQSCVYGALMVFTYASGSA---TSL 117
           K     G+ TV QWM    KN PV+ + PS+S LGIQ+ VYGA+MV TY +GS+   + +
Sbjct: 144 KSSNPLGTSTVTQWM----KNPPVSVDMPSTSDLGIQAGVYGAMMVLTYVNGSSFESSGM 199

Query: 118 PSTYTSPDVPGFILATGFGASLYFLTKKNMNLGKAALITXXXXXXXXXXXXXXENWLQVD 177
           P  Y   DVPG ILA+ FGASLYF+TKK + LGKAA +T              E WL VD
Sbjct: 200 P--YAGADVPGLILASSFGASLYFMTKKKVKLGKAAALTAGGLVAGAVVGSAIETWLHVD 257

Query: 178 VVPFLGVHSPAVVVSEFILFSQLLVSLFVR 207
           VVPFLG+HSPA VVSEFI+FSQ LVSL +R
Sbjct: 258 VVPFLGLHSPAAVVSEFIVFSQFLVSLCLR 287



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,501,882
Number of extensions: 117400
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)