BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0136800 Os03g0136800|AK068822
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23590.1 | chr5:7953870-7954936 REVERSE LENGTH=297 89 4e-18
AT4G39150.1 | chr4:18233651-18235740 REVERSE LENGTH=346 52 4e-07
AT1G76700.1 | chr1:28780619-28783022 REVERSE LENGTH=399 51 6e-07
AT1G21080.3 | chr1:7378822-7382275 REVERSE LENGTH=401 51 9e-07
AT1G16680.1 | chr1:5702930-5705537 FORWARD LENGTH=555 51 9e-07
AT1G68370.1 | chr1:25632046-25634527 REVERSE LENGTH=411 49 3e-06
AT1G59980.1 | chr1:22081069-22083491 FORWARD LENGTH=415 49 4e-06
AT2G21510.1 | chr2:9210841-9212699 REVERSE LENGTH=347 48 5e-06
>AT5G23590.1 | chr5:7953870-7954936 REVERSE LENGTH=297
Length = 296
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 58/103 (56%)
Query: 11 VDHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNFLR 70
VDHY VL L SGEE L+ ++I KAY+ ++ HPDKRPDDP+A FQRL +SY L+
Sbjct: 5 VDHYIVLGLASGEEALKLTEKEIAKAYKLKALDLHPDKRPDDPDAHEKFQRLKTSYEVLK 64
Query: 71 DESLRRQFDXXXXXXXXXXXXXXXXXXXXXXXXSDLEERERAA 113
DE R+ FD SDLEERER+A
Sbjct: 65 DEKARKLFDDLLRIQREKQHKKSQVDSKRRKMMSDLEERERSA 107
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 7/130 (5%)
Query: 170 DKGKILKVSWEGGADYYNAAKLEEIFKQFGGVEDVVIKTRKSRSRGSAIVVMASKEAALS 229
DK ++LKVSWE + Y A +L E+F +FG VEDVVI R ++ + SA++VMA+K+ A++
Sbjct: 170 DKERMLKVSWEKSGEGYTAGRLREVFSEFGEVEDVVI--RSTKKKCSALIVMATKDGAVA 227
Query: 230 ALQNHSVYNVFSVPLIVAPVQESGGVP-TRSTHTPETRP-SNLGGTGFNDLEASVF-RKL 286
A ++ S PL+V P+Q++ + + E P SN+ G G E +V R L
Sbjct: 228 A--TRTLCGNLSNPLLVVPLQKAAQTDFLTAKKSAEAEPQSNIVGAGLQAYEDAVMQRLL 285
Query: 287 QEAQKRKQSG 296
Q A +K+ G
Sbjct: 286 QAAMDQKKRG 295
>AT4G39150.1 | chr4:18233651-18235740 REVERSE LENGTH=346
Length = 345
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 12 DHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNFLRD 71
++Y++L + GA +I+KAY Q+R HPDK P DP A +FQ L +Y L D
Sbjct: 6 EYYDILGVKIDASGA-----EIKKAYYVQARQVHPDKNPGDPQAAKNFQILGEAYQVLGD 60
Query: 72 ESLRRQFD 79
R +D
Sbjct: 61 PEKRTAYD 68
>AT1G76700.1 | chr1:28780619-28783022 REVERSE LENGTH=399
Length = 398
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 10 DVDHYEVLCL-PSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNF 68
+ ++Y+VL + P+ E +I+KAY ++R HPDK P+DP A +FQ L +Y
Sbjct: 4 ETEYYDVLGVSPTATES------EIKKAYYIKARQVHPDKNPNDPQAAHNFQVLGEAYQV 57
Query: 69 LRDESLRRQFD 79
L D R+ +D
Sbjct: 58 LSDSGQRQAYD 68
>AT1G21080.3 | chr1:7378822-7382275 REVERSE LENGTH=401
Length = 400
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 10 DVDHYEVLCL-PSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNF 68
+ + Y+VL + P+ E +I+KAY ++R HPDK P+DP A +FQ L +Y
Sbjct: 4 ETEFYDVLGVSPTATEA------EIKKAYYIKARQVHPDKNPNDPQAAHNFQVLGEAYQV 57
Query: 69 LRDESLRRQFD 79
L D R+ +D
Sbjct: 58 LSDPGQRQAYD 68
>AT1G16680.1 | chr1:5702930-5705537 FORWARD LENGTH=555
Length = 554
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 9 DDVDHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNF 68
D ++HYE L LP ++ + ++K YR ++ L HPDK P A+ F++L S+Y
Sbjct: 288 DSLNHYEALGLPLFKK---IDAALLKKDYRKKAMLVHPDKNMGSPLASESFKKLQSAYEV 344
Query: 69 LRDESLRRQFD 79
L D RR +D
Sbjct: 345 LSDSVKRRDYD 355
>AT1G68370.1 | chr1:25632046-25634527 REVERSE LENGTH=411
Length = 410
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 12 DHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNFLRD 71
D YEVLC+ ++I+ AYR + HPDK ++P+A+ F+ +A SY+ L D
Sbjct: 17 DPYEVLCVSKDAND-----QEIKSAYRKLALKYHPDKNANNPDASELFKEVAFSYSILSD 71
Query: 72 ESLRRQFD 79
RR +D
Sbjct: 72 PEKRRHYD 79
>AT1G59980.1 | chr1:22081069-22083491 FORWARD LENGTH=415
Length = 414
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 5 GQEDD--DVDHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRL 62
G+ED+ + YEVL +PS ++I+ AYR + HPDK PDDP A F+ +
Sbjct: 14 GEEDELRRRNPYEVLGIPSNSTD-----QEIKSAYRRMALRYHPDKNPDDPVAAEMFKEV 68
Query: 63 ASSYNFLRDESLRRQFD 79
+Y L D RR +D
Sbjct: 69 TFAYEVLSDPENRRLYD 85
>AT2G21510.1 | chr2:9210841-9212699 REVERSE LENGTH=347
Length = 346
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 10 DVDHYEVLCLPSGEEGAGLSLEQIEKAYRTQSRLRHPDKRPDDPNATADFQRLASSYNFL 69
+ ++YE+L + + A +I+KAY ++R HPDK P DP A +FQ L +Y L
Sbjct: 4 ETEYYEILGVKTDASDA-----EIKKAYYLKARKVHPDKNPGDPQAAKNFQVLGEAYQVL 58
Query: 70 RDESLRRQFD 79
+ R +D
Sbjct: 59 SNPDKRAAYD 68
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,132,863
Number of extensions: 183600
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 9
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)