BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0133300 Os03g0133300|AK064510
         (371 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G42430.1  | chr1:15891512-15894322 FORWARD LENGTH=427          570   e-163
AT3G55760.1  | chr3:20700648-20702886 FORWARD LENGTH=579          206   1e-53

>AT1G42430.1 | chr1:15891512-15894322 FORWARD LENGTH=427
          Length = 426

 Score =  570 bits (1468), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/313 (87%), Positives = 295/313 (94%)

Query: 38  KQQNFYPRCTPRGPAPQSRDTPPKRDTGIASEKEWGINLLDEAVKESGTNEDGSTWYRES 97
           KQ+ FYPRCTPR   PQSRDTPPKRDTGIA+EK+WGI+LL+E V E+GTNEDGS+W+RES
Sbjct: 98  KQEKFYPRCTPRLTGPQSRDTPPKRDTGIANEKDWGIDLLNENVNEAGTNEDGSSWFRES 157

Query: 98  GDDRGDNGYRCRWARMGGQSHDGTTEWKETWWEKSDWTGYKELGAEKSGKNGEGDSWWEK 157
           G D GDNGYRCRW+RMGG+SHDG++EW ETWWEKSDWTGYKELG EKSGKN EGDSWWE 
Sbjct: 158 GHDLGDNGYRCRWSRMGGRSHDGSSEWTETWWEKSDWTGYKELGVEKSGKNSEGDSWWET 217

Query: 158 WKEVLYQDEWSNLARIERSAEKQAKSGAENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQ 217
           W+EVL+QDEWSNLARIERSA+KQAKSG ENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQ
Sbjct: 218 WQEVLHQDEWSNLARIERSAQKQAKSGTENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQ 277

Query: 218 SWWERWGEHYDGRGFVLKWTDKWAETDLGTKWGDKWEEKFFAGIGSRQGETWHVSPGGDR 277
           SWWE+WGEHYDGRG VLKWTDKWAET+LGTKWGDKWEEKFF+GIGSRQGETWHVSP  DR
Sbjct: 278 SWWEKWGEHYDGRGSVLKWTDKWAETELGTKWGDKWEEKFFSGIGSRQGETWHVSPNSDR 337

Query: 278 WSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEETYYEAEPHYGWADVVGDSTQLLSIQP 337
           WSRTWGEEHFGNGKVHKYGKSTTGESWD+VVDEETYYEAEPHYGWADVVGDSTQLLSIQP
Sbjct: 338 WSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEETYYEAEPHYGWADVVGDSTQLLSIQP 397

Query: 338 VERPPGVYPTIDF 350
            ERPPGVYP ++F
Sbjct: 398 RERPPGVYPNLEF 410



>AT3G55760.1 | chr3:20700648-20702886 FORWARD LENGTH=579
          Length = 578

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 18/301 (5%)

Query: 51  PAPQSRDTPPKRDTGIASEKEWGINLLDEAVKES--GTNEDGSTWYRESGDDRGDNGYRC 108
           P+ ++  T    D   ++  E    +LD   + S  G +EDG  W++++G ++  +G  C
Sbjct: 275 PSSETLSTEHDLDLISSANAEEVARVLDSLDESSTHGVSEDGLKWWKQTGVEKRPDGVVC 334

Query: 109 RWARMGGQSHDGTTEWKETWWEKSDWTGYKELGAEKSGKNGEGDSWWEKWKEVLYQDEWS 168
           RW  + G + DG  EW++ +WE SD  G+KELG+EKSG++  G+ W E W+E + Q+  +
Sbjct: 335 RWTMIRGVTADGVVEWQDKYWEASDDFGFKELGSEKSGRDATGNVWREFWRESMSQE--N 392

Query: 169 NLARIERSAEKQAKSGAENAGWYEKWWEKYDAKGWTEKGAHKYGRLNEQS---------W 219
            +  +E++A+K  KSG +   W EKWWE YDA G +EK AHK+  ++  +         W
Sbjct: 393 GVVHMEKTADKWGKSG-QGDEWQEKWWEHYDATGKSEKWAHKWCSIDRNTPLDAGHAHVW 451

Query: 220 WERWGEHYDGRGFVLKWTDKWAETDLGT---KWGDKWEEKFF-AGIGSRQGETWHVSPGG 275
            ERWGE YDG+G   K+TDKWAE  +G    KWGDKW+E F  +  G +QGETW     G
Sbjct: 452 HERWGEKYDGQGGSTKYTDKWAERWVGDGWDKWGDKWDENFNPSAQGVKQGETWWEGKHG 511

Query: 276 DRWSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEETYYEAEPHYGWADVVGDSTQLLSI 335
           DRW+R+WGE H G+G VHKYGKS++GE WD  V +ET+YE  PH+G+     +S QL ++
Sbjct: 512 DRWNRSWGEGHNGSGWVHKYGKSSSGEHWDTHVPQETWYEKFPHFGFFHCFDNSVQLRAV 571

Query: 336 Q 336
           +
Sbjct: 572 K 572



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.132    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,399,113
Number of extensions: 490724
Number of successful extensions: 912
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)