BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0131300 Os03g0131300|AK100656
(534 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17200.1 | chr2:7482133-7485090 REVERSE LENGTH=552 357 9e-99
AT2G17190.1 | chr2:7478272-7481361 REVERSE LENGTH=539 345 3e-95
AT5G25270.1 | chr5:8757577-8762002 REVERSE LENGTH=659 56 4e-08
AT5G42220.1 | chr5:16872962-16877455 FORWARD LENGTH=880 56 6e-08
>AT2G17200.1 | chr2:7482133-7485090 REVERSE LENGTH=552
Length = 551
Score = 357 bits (916), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 203/401 (50%), Positives = 254/401 (63%), Gaps = 17/401 (4%)
Query: 146 PELSQMQQQLSENPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVL 205
P+L Q QQQL++NP ++R++MN P +QN++N+P+ +R++IMNNPQMRE+VDRNP+L HVL
Sbjct: 155 PDLVQTQQQLAQNPNMIRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVL 214
Query: 206 NDPSILRQTVEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTM 265
NDPSILRQT+EAARNPELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NATTM
Sbjct: 215 NDPSILRQTLEAARNPELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTM 274
Query: 266 AGEG--DRSSNPFSALLGNHG-SNQARDXXXXXXXXXXXXXXXXXXXNTNPLPNPWSTTA 322
+G + SNPF+ALLGN G + Q D N NPLPNPW T
Sbjct: 275 SGNAGNNTGSNPFAALLGNQGVTTQGSD---ASNNSSTPNAGTGTIPNANPLPNPWGATG 331
Query: 323 GAAQGATRPSPVTNARS---------ATAXXXXXXXXXXXXXXXXXXXXXXFLSQVLQNP 373
G R + +ARS + LSQ+LQNP
Sbjct: 332 GQTTAPGRTNVGGDARSPGLGGLGGLGSLGGLGGLGMLGADSPLGATPDASQLSQLLQNP 391
Query: 374 TMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEFVRQLTSPETLQQLIS 433
+ QMMQ++ SNPQ MNQL+++NP +R+M++SN QLREM QNP+F+RQ +SPE +QQ+++
Sbjct: 392 AISQMMQSVFSNPQYMNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQMMT 451
Query: 434 FXXXXXXXXXXXXAGPERTQSXXXXXXXXXXXXMSMFSXXXXXXXXXVPSAPNVPPEELY 493
+T M+MF + NVPPEE Y
Sbjct: 452 LQQSLSQNRNTASQDAGQT-GAATGNNGGLDLLMNMFGSLGAGGLSGTNQS-NVPPEERY 509
Query: 494 ATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG 534
ATQL QLQEMGF+D ENIRAL+AT GNV+AAVERLLG+IG
Sbjct: 510 ATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLLGSIG 550
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 59/70 (84%)
Query: 18 LHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVE 77
++IRC+NG+K +V+ L +V +FK +VA+S DVPA QQRLIYKGRILKD+QTL SYG++
Sbjct: 20 VNIRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQ 79
Query: 78 TDHTIHMVRG 87
DHTIHMVRG
Sbjct: 80 ADHTIHMVRG 89
>AT2G17190.1 | chr2:7478272-7481361 REVERSE LENGTH=539
Length = 538
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/386 (52%), Positives = 247/386 (63%), Gaps = 19/386 (4%)
Query: 158 NPTLMREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEA 217
NP ++RE+MN P +QN++N+P+ +R++IMNNPQMRE+VDRNP+L HVLNDPSILRQT+EA
Sbjct: 162 NPNMIREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEA 221
Query: 218 ARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMA--GEGDRSSNP 275
ARNPELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NATTM+ + SSNP
Sbjct: 222 ARNPELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTMSENAGNNTSSNP 281
Query: 276 FSALLGNHG-SNQARDXXXXXXXXXXXXXXXXXXXNTNPLPNPWSTTAGAAQGATRPSPV 334
F+ALLGN G + Q D N NPLPNPW TAG R
Sbjct: 282 FAALLGNQGVTTQGSD----TSNNISAPNAETGTPNANPLPNPWGATAGQTTAPGR---- 333
Query: 335 TNARSATAXXXXXXXXXXXXXXXX---XXXXXXFLSQVLQNPTMMQMMQNIMSNPQSMNQ 391
TNA LSQ+LQNP M QMMQ+++SNPQ MNQ
Sbjct: 334 TNAGLGGLGGLGGLGGLGMLGADSPLGATPDASQLSQILQNPAMSQMMQSVLSNPQYMNQ 393
Query: 392 LLNINPNVRNMMESNTQLREMFQNPEFVRQLTSPETLQQLISFXXXXXXXXXXXXAGPER 451
L+++NP +R+M++ N QLREM QNP+F+RQ +SPE +QQ++S AG +
Sbjct: 394 LMSLNPQLRSMLDMNPQLREMMQNPDFLRQFSSPEMMQQMMS-LQQSLFSQNRNTAGQDP 452
Query: 452 TQSXXXXXXXXXXX---XMSMFSXXXXXXXXXVPSAPNVPPEELYATQLAQLQEMGFFDT 508
TQ+ M+MF + PNVPPEE +ATQL QLQEMGF+D
Sbjct: 453 TQTGAATGTANNGGLDLLMNMFGSLGAGGLSGT-NQPNVPPEERFATQLQQLQEMGFYDR 511
Query: 509 QENIRALIATAGNVHAAVERLLGNIG 534
ENIRAL+AT GNV+AAVERLLG+IG
Sbjct: 512 AENIRALLATNGNVNAAVERLLGSIG 537
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 58/70 (82%)
Query: 18 LHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVE 77
+++RC+NG+K +V L +V +FK ++A++ DVPA QQRLIYKGRILKD+QTL SYG++
Sbjct: 20 VNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQ 79
Query: 78 TDHTIHMVRG 87
DHT+HMVRG
Sbjct: 80 ADHTVHMVRG 89
>AT5G25270.1 | chr5:8757577-8762002 REVERSE LENGTH=659
Length = 658
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 18 LHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVE 77
+ I+ + +R D + V A K VA V QQRLI +G+++KD+Q L++Y VE
Sbjct: 23 IKIKTLDSQTYTLRVDKCVPVPALKEQVASVTGVVTEQQRLICRGKVMKDDQLLSAYHVE 82
Query: 78 TDHTIHMV 85
HT+H+V
Sbjct: 83 DGHTLHLV 90
>AT5G42220.1 | chr5:16872962-16877455 FORWARD LENGTH=880
Length = 879
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 18 LHIRCTNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVE 77
L+I+ + + + +V FK +A VP QQRLI++GR+LKD+ L+ Y +E
Sbjct: 26 LNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLE 85
Query: 78 TDHTIHMV 85
HT+H++
Sbjct: 86 NGHTLHLI 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,948,987
Number of extensions: 253681
Number of successful extensions: 814
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 6
Length of query: 534
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 431
Effective length of database: 8,282,721
Effective search space: 3569852751
Effective search space used: 3569852751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)