BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0130500 Os03g0130500|AK069816
(1068 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020 405 e-113
AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248 335 6e-92
AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547 76 1e-13
AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546 72 2e-12
>AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020
Length = 1019
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/347 (61%), Positives = 252/347 (72%), Gaps = 10/347 (2%)
Query: 429 WPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGM 488
WPK+ SD+QKYTKVF +VD D+DGKITG +AR LFLSWRLPRE+LK VW+LSDQDND M
Sbjct: 352 WPKMKPSDVQKYTKVFMEVDSDKDGKITGEQARNLFLSWRLPREVLKHVWELSDQDNDTM 411
Query: 489 LSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSWQQNQGLPH 548
LSLREFCI+LYLMER+R G PLP ALP S+ +DE LL +G PS Y W QG
Sbjct: 412 LSLREFCISLYLMERYREGRPLPTALPSSIMFDETLLSISGAPSHGYANAGWGSGQGFVQ 471
Query: 549 K-GPGAAGM-PATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANK-DDGSGA 605
+ G GA + P TG+R P+P G P QPR P +D AP AN +G A
Sbjct: 472 QPGMGARPITPTTGMRPPVPAPGPQPGSGI-PPNQPRNQAPVLD---APFANHLGNGYSA 527
Query: 606 NSAVQEDAPKKVEV-EKQ--VLDSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASSDK 662
+S + E A + +V EKQ +DSREKL+YYRTKMQD+VLYKSRCDNRLNEI+ERAS+DK
Sbjct: 528 SSNLPEAAADEEKVDEKQNAYMDSREKLDYYRTKMQDIVLYKSRCDNRLNEISERASADK 587
Query: 663 REVESLAKKYEEKYKQVAELASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLLQV 722
RE E+LAKKYEEKYKQVAE+ SKL +EE FR+++ RK+EL A+V M QGGS DGLLQV
Sbjct: 588 REAETLAKKYEEKYKQVAEIGSKLTIEEARFREIEGRKMELSQAIVNMEQGGSADGLLQV 647
Query: 723 RADRIQYQLEEMEKAFSERCKHFGLQFKPSASVELPFGWEPGKQEGA 769
RADRIQ LEE+ KA +ERCK GL+ A V+LP GW+PG QEGA
Sbjct: 648 RADRIQSDLEELMKALTERCKKHGLEVNSKALVDLPAGWQPGIQEGA 694
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 1 MAG----MEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFL 56
MAG M+ FEAYF+RADL+ DGRISG EAV FFQG+ L +QVLAQ+W +D++ +GFL
Sbjct: 1 MAGQNPNMDQFEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFL 60
Query: 57 GRPEFFNALRLVTVAQSGRQLTPDIVQSAL 86
R F+N+LRLVTVAQS R LTP+IV +AL
Sbjct: 61 DRQNFYNSLRLVTVAQSKRDLTPEIVNAAL 90
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 103/222 (46%), Gaps = 58/222 (26%)
Query: 896 KYADETSWN--FD-DQDTESVWGSNAMNNESDHHGSAHNSFFGS-DDFGVNPVRVGSPSG 951
++ D+++W FD + D +SVWG +A S +FGS DDFG N R SPS
Sbjct: 798 EFFDDSNWASAFDTNDDVDSVWGFDASK-------SQDGDYFGSGDDFGGNTARADSPSS 850
Query: 952 ASTYGKXXXXXXXXXXXXXXAYTSGFS---PKFSE-SRDDSSSYNLGRFDSFRSQESG-- 1005
S +G S F P+FS+ S D++ + RFDSF + E+G
Sbjct: 851 RS-FGAQRKSQFAFDDSVPSTPLSRFGNSPPRFSDASARDNNFDSFSRFDSFNTSEAGAG 909
Query: 1006 FFPQESRFSRFDSINNSK---------------GENVTG------FDSPKSSTNFG---- 1040
F Q R SRFDSIN+SK +VTG FDS SS +FG
Sbjct: 910 FSSQPERLSRFDSINSSKDFGGAAFSRFDSINSSRDVTGAEKFSRFDSINSSKDFGGPSL 969
Query: 1041 -RFDS--------------FDDADPFGSSGPFKASGSRSPPK 1067
RFDS FDDADPFGS+GPFK S SP K
Sbjct: 970 SRFDSMNSTKDFSGSHGYSFDDADPFGSTGPFKVSSDESPTK 1011
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 436 DIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGMLSLREFC 495
++ ++ F D D DG+I+GAEA F L +++L Q+W LSD+ + G L + F
Sbjct: 7 NMDQFEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFY 66
Query: 496 IALYLMERHRAGTPLPPAL 514
+L L+ ++ L P +
Sbjct: 67 NSLRLVTVAQSKRDLTPEI 85
>AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248
Length = 1247
Score = 335 bits (860), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 216/542 (39%), Positives = 296/542 (54%), Gaps = 55/542 (10%)
Query: 429 WPKVTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGM 488
WPK+T +D+QKYTKVF VD DRDGKITG +AR LFLSWRLPR+ LKQVWDLSDQDND M
Sbjct: 417 WPKMTPADVQKYTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSM 476
Query: 489 LSLREFCIALYLMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYNGPSWQQNQGL-- 546
LSLREFCIA+YLMER+R G PLPP P S+ + E + + G + SW QG
Sbjct: 477 LSLREFCIAVYLMERYREGRPLPPVFPSSIIHSESMFTSPGQSVAPHGNASWGHPQGFQQ 536
Query: 547 -PHKGPGAAGMPATGVRQPLPPHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKDDGSGA 605
PH PG PA +P P + DG +P QP+ MP ++ Q +K++
Sbjct: 537 QPH--PGGLRPPAGPKGKPPRPVPLSPSDGMVQPTQPKRKMPVLEKPLVDQLSKEEQDSL 594
Query: 606 NSAVQEDAP--KKV-------------------------------EVEKQVLDSREKLEY 632
N+ +E KK E+EK++ DS++K+++
Sbjct: 595 NTKFEEATAVDKKFSFFAFSIRRYLLPLPYGIYMKYLWICVAIVDELEKEIADSKQKIDF 654
Query: 633 YRTKMQDLVLYKSRCDNRLNEITERASSDKREVESLAKKYEEKYKQVAELASKLAVEEHA 692
+R KMQ+LVLYKSRCDNR NEI ER DKRE+ESLAKKYEEKYK+ + SKL +EE
Sbjct: 655 FRAKMQELVLYKSRCDNRYNEIAERVLGDKRELESLAKKYEEKYKKSGNVGSKLTIEEAT 714
Query: 693 FRDVQERKVELHDALVKMVQGGSVDGLLQVRADRIQYQLEEMEKAFSERCKHFGLQFKPS 752
FRD+QE+K+EL+ A+VK +G D +++ R + IQ LEE+ K +ERCK +G++ KP+
Sbjct: 715 FRDIQEKKMELYQAIVKFEEGKLDDSIVK-RTEHIQSGLEELIKNLNERCKQYGVRGKPT 773
Query: 753 ASVELPFGWEPGKQEGAIXXXXXXXXXXXXXXXXVKDNGTIVENPVASENVKVPSLWNDM 812
+ VELPFGW+PG QEGA VK+ ++N +A K + ++
Sbjct: 774 SLVELPFGWQPGIQEGAADWDEDWDKLEDEGFTFVKELTLDIQNVIAPPKEKSSAWRKEV 833
Query: 813 DESP-----VASSNGHIKAERHYRAGDHAAESDLGYDFGEESVXXXXXXXXXXXXXXFVS 867
D S V+ S+ K + +G+ +E G ++ +
Sbjct: 834 DVSSKEGEDVSFSDADSKTGKKQSSGEEDSEQSEGKTSDVDARDKNGSLDDSKVRKGIEA 893
Query: 868 SNFAMHDSSPSKKETYSDHGGSESIFGDKYADE-TSWNFDDQD-TESVWGSNAMNNESDH 925
DSSP K+T S++G + G+ A + N+D D T+SV N N +
Sbjct: 894 ------DSSPRTKDTRSENGHDD---GESTASAGKTVNYDSHDETDSVSSVNPDNGKDKD 944
Query: 926 HG 927
HG
Sbjct: 945 HG 946
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 3 GMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFF 62
G + F+ YFRRADL+ DG ISG EAVAFFQG+NLP+ VLAQVW +AD K G+LGR EF+
Sbjct: 9 GQDLFDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFY 68
Query: 63 NALRLVTVAQSGRQLTPDIVQSALY 87
NAL+LVTVAQS R+LT +IV++A+Y
Sbjct: 69 NALKLVTVAQSRRELTAEIVKAAIY 93
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 440 YTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGMLSLREFCIALY 499
+ F D D DG I+GAEA F LP+ +L QVW +D G L EF AL
Sbjct: 13 FDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFYNALK 72
Query: 500 LMERHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYN---GPSWQQNQGLP-HKGPGAAG 555
L+ ++ L + + Y + +P+ N PS Q LP + G
Sbjct: 73 LVTVAQSRRELTAEIVKAAIYSPA---SANIPAPKINLAATPSPQPRGVLPATQAQGVTS 129
Query: 556 MP--ATGVRQPLPPHLQAQMDGANR---PGQ 581
MP A GVR PH+ + +N+ PGQ
Sbjct: 130 MPSVAAGVRG---PHMGGTVSTSNQQVVPGQ 157
>AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547
Length = 546
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 5 EAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNA 64
+ ++ +F AD + DGR+SG +A FF + L +Q L QVW AD + GFLG EF A
Sbjct: 18 KIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITA 77
Query: 65 LRLVTVAQSGRQLTPDIVQSAL 86
++LV++AQ G ++T D+++ ++
Sbjct: 78 MKLVSLAQEGHEITSDLLKGSI 99
>AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546
Length = 545
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 54/78 (69%)
Query: 7 FEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNALR 66
++ +F +D + DGRI+G +A+ FF +NLP+ L Q+W AD + G+LG EF A++
Sbjct: 19 YKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQ 78
Query: 67 LVTVAQSGRQLTPDIVQS 84
LV++AQ+G +++ +++ S
Sbjct: 79 LVSLAQTGHEISHEVLIS 96
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 440 YTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGMLSLREFCIALY 499
Y + F D D DG+ITG +A F LPR LKQ+W ++D G L +EF +A+
Sbjct: 19 YKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQ 78
Query: 500 LMERHRAG 507
L+ + G
Sbjct: 79 LVSLAQTG 86
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,384,175
Number of extensions: 908067
Number of successful extensions: 3250
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3239
Number of HSP's successfully gapped: 12
Length of query: 1068
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 959
Effective length of database: 8,118,225
Effective search space: 7785377775
Effective search space used: 7785377775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)