BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0120300 Os03g0120300|AK066854
         (281 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02180.1  | chr2:560976-562961 FORWARD LENGTH=304              427   e-120
AT1G14530.1  | chr1:4971420-4973597 REVERSE LENGTH=294            395   e-110
AT4G21790.1  | chr4:11569924-11572163 FORWARD LENGTH=292          309   1e-84

>AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304
          Length = 303

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/272 (72%), Positives = 226/272 (83%)

Query: 10  APDWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNF 69
           A +WW+DVN SP+WQDR FH LA LYG VS VA++QL+RI+ RVPEYGWTTQKVFHF+NF
Sbjct: 32  ASNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQLVRIQLRVPEYGWTTQKVFHFLNF 91

Query: 70  IVNGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTD 129
           +VNGVR++VFV RR+VQ +QPE+ QH+L+D P LAFFTTYALLVLFWAEIYYQARA+STD
Sbjct: 92  VVNGVRAVVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTD 151

Query: 130 GLRPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXX 189
           GLRP+F+TIN VVY +QI LW+ LWWKPVR MVILSKMFFA  S                
Sbjct: 152 GLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFL 211

Query: 190 XXQRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFY 249
             QRFPVESKGRRKKL EVGYVTTICF+ FLIRC+MMC  AFD+ A+LDVL+HPILNF Y
Sbjct: 212 MLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIY 271

Query: 250 YLLVEIVPSALVLFILRKLPPKRGITQYHPIH 281
           YLLVEI+PS+LVLFILRKLPPKRGITQYH I 
Sbjct: 272 YLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303



>AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294
          Length = 293

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 228/284 (80%), Gaps = 6/284 (2%)

Query: 4   STAAAVA------PDWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYG 57
           S++A VA       +WW DVN SP+WQDR FH LA LYG VS +A++QL+RI+ RVPEYG
Sbjct: 10  SSSAIVAFNLKEGKNWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQLVRIQLRVPEYG 69

Query: 58  WTTQKVFHFMNFIVNGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWA 117
           WTTQKVFHF+NF+VNGVR++VF+ RRD Q +QPE+ QH+L+D P LAFFTTYALLVLFWA
Sbjct: 70  WTTQKVFHFLNFMVNGVRALVFLFRRDAQNMQPEILQHILLDIPSLAFFTTYALLVLFWA 129

Query: 118 EIYYQARAMSTDGLRPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXX 177
           EIYYQARA+STDGLRP+F+TIN VVY IQI LW+ LWWKPV  MVI+SKMFFA  S    
Sbjct: 130 EIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAA 189

Query: 178 XXXXXXXXXXXXXXQRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADL 237
                         QRFPVESKGRRKKL EVGYVTTICF+ FLIRC+MMC +AFD  ADL
Sbjct: 190 LGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADL 249

Query: 238 DVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKRGITQYHPIH 281
           DVL+HPILNF YYLLVEI+PS+LVLFILRKLPPKRGITQYH I 
Sbjct: 250 DVLDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293



>AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292
          Length = 291

 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 151/270 (55%), Positives = 187/270 (69%)

Query: 12  DWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFIV 71
            WW+DVN S  WQD  F AL   Y  VS VALVQLIRI+ RVPEYGWTTQKVFH MNF+V
Sbjct: 22  SWWDDVNESTQWQDGIFFALCGAYALVSAVALVQLIRIQMRVPEYGWTTQKVFHLMNFVV 81

Query: 72  NGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDGL 131
           NGVR+++F     V LV P+    VL+D PGL FF+ Y LLVLFWAEIY+QAR++ TD L
Sbjct: 82  NGVRAVLFGFHMQVFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKL 141

Query: 132 RPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXXXX 191
           R  + ++N  VY  QI +W  +W      + ++ K+F A  S                  
Sbjct: 142 RITYISVNVAVYLAQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFML 201

Query: 192 QRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYYL 251
           +RFP+ESKGRRKKL+EVG VT ICF+ FLIRCV++ ++AFDK+  LDVL+HP+LN  YY+
Sbjct: 202 RRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYM 261

Query: 252 LVEIVPSALVLFILRKLPPKRGITQYHPIH 281
           +VE++PSALVLFILRKLPPKR   QYHPI 
Sbjct: 262 VVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,426,411
Number of extensions: 194157
Number of successful extensions: 507
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 4
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)