BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0120200 Os03g0120200|AK121787
         (423 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02170.1  | chr2:556595-558610 REVERSE LENGTH=487              154   8e-38
AT1G30320.1  | chr1:10680348-10682852 FORWARD LENGTH=510          118   7e-27
AT1G67590.1  | chr1:25333137-25334472 REVERSE LENGTH=348           84   2e-16

>AT2G02170.1 | chr2:556595-558610 REVERSE LENGTH=487
          Length = 486

 Score =  154 bits (389), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 135/258 (52%), Gaps = 7/258 (2%)

Query: 172 LVKNSV---ALAQPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTGXXX 228
           +V+NS+   A    +S + +  A+   +P    RSVSMRDMGTEMTPIASQEPSR G   
Sbjct: 228 MVENSIVESATEVNLSRHDSSVATAFAQPPSTARSVSMRDMGTEMTPIASQEPSRNGTPI 287

Query: 229 XXXXXXXXXXXXXQRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWA 288
                          +          +  E+SE+ELQM TR+EIM LG +LGK  IAAWA
Sbjct: 288 RATTPIRSPISSEPSSPGRQASASPMSNKELSEKELQMKTRREIMVLGTQLGKFNIAAWA 347

Query: 289 SKEEKSTTSFANVITDKAVXXXXXXXXXXXXX---XXXXXYLARFQREEVKIQAWENHQK 345
           SKE++   +  ++ T  ++                     ++ARF+REE+KIQAWENHQK
Sbjct: 348 SKEDEDKDASTSLKTKASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQK 407

Query: 346 AKIEAEMKRMEAKIEIKRAREQDRLSSKLXXXXXXXXXXXXXXXSRKNXXXXXXXXXXXX 405
           AK EAEMK+ E K+E  + R QDRL  KL               ++K+            
Sbjct: 408 AKSEAEMKKTEVKVERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQ 467

Query: 406 IRKTGHIPSSI-SCWCWC 422
           IR+TG +PS + SC+ +C
Sbjct: 468 IRRTGKVPSLLFSCFSFC 485



>AT1G30320.1 | chr1:10680348-10682852 FORWARD LENGTH=510
          Length = 509

 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 198 APAVRSVSMRDMGTEMTPIASQEPSRTGX---XXXXXXXXXXXXXXXQRNAEISIGEFGP 254
            PA+RSV MRDMGTEMTPI SQEPSR+                     R  +        
Sbjct: 279 GPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRGGQPEESSMSK 338

Query: 255 N-KMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEEKSTTSFANVITDKAVXXXXXX 313
           N + E+SEEE +  TR+EI+ LG +LGK  IAAWASKEE+          ++A       
Sbjct: 339 NTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEEENKKNNG-DAEEAQKIEFEK 397

Query: 314 XXXXXXXXXXXXYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSK 373
                       + AR++REE++IQAWE+ +KAK+EAEM+R+EAK+E  +A  + ++  K
Sbjct: 398 RATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKAEAEAKIMKK 457

Query: 374 LXXXXXXXXXXXXXXXSRKNXXXXXXXXXXXXIRKTGHIPSSIS--CWCW 421
           +               +RK             IR+TG IP+S    C  W
Sbjct: 458 IALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIPASSYKICCGW 507



>AT1G67590.1 | chr1:25333137-25334472 REVERSE LENGTH=348
          Length = 347

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 326 YLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSKLXXXXXXXXXXX 385
           ++AR++REEVKIQAWENH+K K E EMK+ME K E  +AR +++L++KL           
Sbjct: 244 FMARYKREEVKIQAWENHEKRKAEMEMKKMEVKAERMKARAEEKLANKLAATKRIAEERR 303

Query: 386 XXXXSRKNXXXXXXXXXXXXIRKTGHIPSSIS--------CWC 420
               ++ N            IR++GH+PSS S        CWC
Sbjct: 304 ANAEAKLNEKAVKTSEKADYIRRSGHLPSSFSFSFKLPSRCWC 346



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,360,356
Number of extensions: 194067
Number of successful extensions: 552
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 5
Length of query: 423
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 322
Effective length of database: 8,337,553
Effective search space: 2684692066
Effective search space used: 2684692066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)