BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0117800 Os03g0117800|AK066948
         (342 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61080.1  | chr3:22607152-22608883 FORWARD LENGTH=327          463   e-131

>AT3G61080.1 | chr3:22607152-22608883 FORWARD LENGTH=327
          Length = 326

 Score =  463 bits (1192), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/297 (73%), Positives = 249/297 (83%)

Query: 46  MAALGEDPIRQWILTEGKATKITGVSSIGGGCINSAQCYKTDASSFFVKTNGRIGPSMFE 105
           MAA+ EDPIR+WILTEGKAT+IT + S+GGGCIN A  Y+TDA SFFVKTN  IGP+MFE
Sbjct: 30  MAAMSEDPIREWILTEGKATQITKIGSVGGGCINLASHYQTDAGSFFVKTNRSIGPAMFE 89

Query: 106 GEALGLKAMYDTNSIRVPLPYKVGSLPTGGSFIIMEFIEFGCSRGDQSALGRKLAEMHKA 165
           GEALGL+AMY+T +IRVP P+K G LPTGGS+IIMEFI+FG SRG+Q+ LGRKLAEMHKA
Sbjct: 90  GEALGLEAMYETRTIRVPNPHKAGELPTGGSYIIMEFIDFGGSRGNQAELGRKLAEMHKA 149

Query: 166 AKSDKGYGFYVDNTIGSTPQINTWTADWIEFYSKHRLGFQLELITQRFGDSAIYDKGQRL 225
            K+ KG+GF VDNTIGSTPQINTW++DWIEFY + RLG+QL+L   ++GDSAIY KG  L
Sbjct: 150 GKTSKGFGFEVDNTIGSTPQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGHTL 209

Query: 226 IENMHPLFEGAVMEPCLLHGDLWSGNISSDTNGEPVILDPACYYGHNEAEFGMSWCAGFG 285
           I+NM PLFE  V+EPCLLHGDLWSGNI+ D N EPVILDPACYYGHNEA+FGMSWCAGFG
Sbjct: 210 IQNMAPLFENVVIEPCLLHGDLWSGNIAYDKNNEPVILDPACYYGHNEADFGMSWCAGFG 269

Query: 286 GEFYSSYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSAMSIIDDYLRMLKA 342
             FY++YF+VMPKQ G+EKRRD             FGSGYRSSAMSIIDDYLRMLKA
Sbjct: 270 ESFYNAYFKVMPKQAGYEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLRMLKA 326



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,722,026
Number of extensions: 288659
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 243
Effective length of database: 8,392,385
Effective search space: 2039349555
Effective search space used: 2039349555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)