BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0116200 Os03g0116200|J100047K06
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341 84 1e-17
AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334 83 2e-17
AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326 82 6e-17
AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365 81 1e-16
AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334 80 2e-16
AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319 79 6e-16
AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373 78 1e-15
AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372 75 9e-15
AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347 74 1e-14
AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351 72 4e-14
AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386 68 1e-12
AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515 51 2e-07
AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528 47 2e-06
>AT5G22460.1 | chr5:7443659-7445269 REVERSE LENGTH=341
Length = 340
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 4 QEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCH 63
++V EELG+Y V +DRAGYGESDP+P+R+VKS GPKFYV+GISLG +
Sbjct: 84 KDVIEELGIYFVFYDRAGYGESDPHPSRTVKSEAYDIQELADKLKIGPKFYVLGISLGAY 143
Query: 64 AVWGALKYIPER 75
+V+ LKYIP R
Sbjct: 144 SVYSCLKYIPHR 155
>AT3G03230.1 | chr3:744478-746009 REVERSE LENGTH=334
Length = 333
Score = 83.2 bits (204), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 4 QEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCH 63
QE+ +E +Y + FDRAGYGESDPNP R++K+ GPKF+VIG+SLG +
Sbjct: 80 QEMIDEFKIYFLFFDRAGYGESDPNPTRTLKTDTYDIEELADKLQVGPKFHVIGMSLGAY 139
Query: 64 AVWGALKYIPER 75
V+G LKYIP R
Sbjct: 140 PVYGCLKYIPNR 151
>AT3G44510.2 | chr3:16108251-16111139 REVERSE LENGTH=326
Length = 325
Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 4 QEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCH 63
QE+ E+G+Y V +DRAGYGESDPNP RS+KS G +FY+IGIS+G +
Sbjct: 51 QELVNEIGIYFVLYDRAGYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIGISMGSY 110
Query: 64 AVWGALKYIPER 75
VW LK+IP+R
Sbjct: 111 TVWSCLKHIPQR 122
>AT2G36290.1 | chr2:15208867-15210768 REVERSE LENGTH=365
Length = 364
Score = 80.9 bits (198), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 43/71 (60%)
Query: 5 EVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHA 64
++ E LGVYMV FDR GY ESDP+PNR+ KS G KFYVIG S+G A
Sbjct: 104 DIKEGLGVYMVSFDRPGYAESDPDPNRTPKSLALDIEELADQLSLGSKFYVIGYSMGGQA 163
Query: 65 VWGALKYIPER 75
W LKYIP R
Sbjct: 164 TWACLKYIPHR 174
>AT3G03240.1 | chr3:746781-748291 REVERSE LENGTH=334
Length = 333
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 4 QEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCH 63
QE+ +E +Y + FDRAGYGESDP+P+R++K+ GPKF+V+G+SLG +
Sbjct: 80 QEMIDEFEIYFLLFDRAGYGESDPHPSRTLKTDTYDIEELADKLQIGPKFHVLGMSLGAY 139
Query: 64 AVWGALKYIPER 75
V+G LKYIP R
Sbjct: 140 PVYGCLKYIPHR 151
>AT1G08310.2 | chr1:2619134-2620338 FORWARD LENGTH=319
Length = 318
Score = 78.6 bits (192), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 3 FQEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGC 62
FQE+ EEL VY++ +DR+GYG SD N RS++S GPKFY+IGIS+G
Sbjct: 55 FQELIEELEVYLLFYDRSGYGASDSNTKRSLESEVEDIAELADQLELGPKFYLIGISMGS 114
Query: 63 HAVWGALKYIPER 75
+ WG L++IP R
Sbjct: 115 YPTWGCLRHIPHR 127
>AT1G74280.1 | chr1:27929758-27931126 FORWARD LENGTH=373
Length = 372
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 45/71 (63%)
Query: 5 EVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHA 64
++ EELGVYMV FDR GY ESDP+P+R+ +S G KFYV+G S+G A
Sbjct: 108 DLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELADQLSLGSKFYVLGYSMGGQA 167
Query: 65 VWGALKYIPER 75
WG LKYIP R
Sbjct: 168 AWGCLKYIPHR 178
>AT1G74290.1 | chr1:27931836-27934268 FORWARD LENGTH=372
Length = 371
Score = 74.7 bits (182), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 5 EVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHA 64
++ EELGVYMV FDR GY ESDP+P+R+ +S G KFYVIG S+G A
Sbjct: 108 DLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELDDQLSLGSKFYVIGKSMGGQA 167
Query: 65 VWGA--LKYIPER 75
WG LKYIP R
Sbjct: 168 AWGCLNLKYIPHR 180
>AT1G74300.1 | chr1:27935368-27936474 FORWARD LENGTH=347
Length = 346
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 43/71 (60%)
Query: 5 EVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHA 64
++ +E GVYMV FD+ GYGESDP+P R+ KS G KFYVIG S+G A
Sbjct: 91 DLVQERGVYMVSFDKPGYGESDPDPIRTPKSLALDIEELADQLSLGSKFYVIGKSMGGQA 150
Query: 65 VWGALKYIPER 75
WG LKY P R
Sbjct: 151 AWGCLKYTPHR 161
>AT3G54240.1 | chr3:20080926-20082145 FORWARD LENGTH=351
Length = 350
Score = 72.4 bits (176), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 8 EELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHAVWG 67
E+ G+Y+V +DR GYGESDP+ +R+ K+ G KFYV+G S+G AVWG
Sbjct: 95 EKNGIYVVSYDRPGYGESDPHSSRNEKTLAHDVEQLADQLQLGSKFYVVGYSMGGQAVWG 154
Query: 68 ALKYIPER 75
LKYIP R
Sbjct: 155 VLKYIPHR 162
>AT3G48410.1 | chr3:17925786-17928100 REVERSE LENGTH=386
Length = 385
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 39/70 (55%)
Query: 6 VAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHAV 65
+ EEL +Y+V FDR GYGESDPN N S +S GP+FY+ G S+G
Sbjct: 120 LVEELRIYIVSFDRPGYGESDPNLNGSPRSIALDIEELADGLGLGPQFYLFGYSMGGEIT 179
Query: 66 WGALKYIPER 75
W L YIP R
Sbjct: 180 WACLNYIPHR 189
>AT5G02970.1 | chr5:695391-697412 FORWARD LENGTH=515
Length = 514
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 9 ELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCHAVWGA 68
E GV +V +D G+GESDP+ R++ S KF+++G S G W
Sbjct: 211 EYGVRLVSYDLPGFGESDPHRGRNLSSSASDMINLAAAIGIDEKFWLLGYSTGSIHTWAG 270
Query: 69 LKYIPER 75
+KY PE+
Sbjct: 271 MKYFPEK 277
>AT3G09690.1 | chr3:2972356-2974592 FORWARD LENGTH=528
Length = 527
Score = 46.6 bits (109), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 4 QEVAEELGVYMVGFDRAGYGESDPNPNRSVKSXXXXXXXXXXXXXXGPKFYVIGISLGCH 63
+ + ++ GV +V +D G+GESDP+ R++ S KF+++G S G
Sbjct: 209 ESLLKDYGVRLVSYDLPGFGESDPHRARNLSSSASDMIDLAAALGIVDKFWLLGYSSGSV 268
Query: 64 AVWGALKYIPER 75
W A++Y P++
Sbjct: 269 HAWAAMRYFPDQ 280
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.142 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,457,327
Number of extensions: 36039
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)