BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0113900 Os03g0113900|AK107900
(197 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 69 1e-12
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 60 1e-09
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 59 2e-09
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 59 2e-09
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 57 5e-09
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 55 2e-08
AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167 54 5e-08
AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204 54 7e-08
AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164 54 8e-08
AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202 54 8e-08
AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163 53 1e-07
AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184 53 1e-07
AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145 50 8e-07
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 4/50 (8%)
Query: 151 MVPPHVVAARRHARSS----SVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
M+PPH + AR A+SS SVLEGAGRTLKGRDLR+VRNAV R+TGF+D
Sbjct: 194 MLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 151 MVPPHVVAARRHAR----SSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
MVPPH + A+R AR S S+ EG GRTLKGRDL + RNAVL +TGFL+
Sbjct: 96 MVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 151 MVPPHVVAARRHARSS----SVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
MVPPH AR+ AR+ S+ EG GRTLKGRDL +VRNAVL +TGFL+
Sbjct: 119 MVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 152 VPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
+PPH A+ S SV EG GRTLKGRD+ RVRNA+L +TGFLD
Sbjct: 104 LPPHEYLAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Query: 151 MVPPHVVAARRHA---RSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
M+PPH++ RR + SV G+GRTLKGRDL RVRN+VLR TGFL+
Sbjct: 87 MIPPHIMIGRRIQGGQMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGFLE 135
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 151 MVPPHVVAARRHA---RSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
M+PPH++ RR + SV G GRTLKGRDL RVRN+VL+ TGFL+
Sbjct: 91 MIPPHLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139
>AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167
Length = 166
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 31/46 (67%)
Query: 151 MVPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
M+PPH ARR S +V EG G T KGRDLRR+RNA+ + GF D
Sbjct: 121 MIPPHEYLARRRGSSFTVHEGIGGTAKGRDLRRLRNAIWEKIGFQD 166
>AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204
Length = 203
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 8/53 (15%)
Query: 151 MVPPHVVAARRHARSS--------SVLEGAGRTLKGRDLRRVRNAVLRQTGFL 195
M+PPH A+ AR S SV +G GRTLKGR+LRRVR+A+ QTGF
Sbjct: 150 MMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFY 202
>AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164
Length = 163
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 152 VPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
+PPH A+ S SV EG GRTLKGRDL RVRNA+ + GF D
Sbjct: 119 LPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGFQD 163
>AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202
Length = 201
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
Query: 151 MVPPHVVAARRHARSS-------SVLEGAGRTLKGRDLRRVRNAVLRQTGFL 195
M+PPH A+ R S SV EG GRTLKGR+LRRVR+A+ QTGF
Sbjct: 149 MMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFY 200
>AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 30/45 (66%)
Query: 152 VPPHVVAARRHARSSSVLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
VPPH + A R S SV EGAGRTLKGRDL RVRN + + G D
Sbjct: 118 VPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED 162
>AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184
Length = 183
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 151 MVPPHVVAARRHARS---SSVLEGAGRTLKGRDLRRVRNAVLRQTGFL 195
MVPPH A R SSV G GRTLKGRD+RRVR+AV QTGF
Sbjct: 135 MVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRDMRRVRDAVWSQTGFY 182
>AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145
Length = 144
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 168 VLEGAGRTLKGRDLRRVRNAVLRQTGFLD 196
V+EG GR LKGRDL +VRNA+L+QTGFL+
Sbjct: 116 VMEGVGRKLKGRDLSKVRNAILKQTGFLE 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,635,741
Number of extensions: 79899
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 13
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)