BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0112800 Os03g0112800|AK100572
         (661 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36210.3  | chr4:17130354-17134302 FORWARD LENGTH=673          601   e-172
AT2G18100.1  | chr2:7867929-7871337 FORWARD LENGTH=657            569   e-162

>AT4G36210.3 | chr4:17130354-17134302 FORWARD LENGTH=673
          Length = 672

 Score =  601 bits (1550), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 327/679 (48%), Positives = 406/679 (59%), Gaps = 52/679 (7%)

Query: 3   TTLTPTQRYXXXXXXXXXXRQAQIHQSVLLGAXXXXXXXXEEQGRXXXXXXXXXXXXXXX 62
           + LTPTQRY           QAQI+Q+  LG          ++ R               
Sbjct: 6   SNLTPTQRYAAGALFAIALNQAQINQTQPLGTPAAEDDDGGDEERRSNCSSGDSVSD--- 62

Query: 63  XXXXXXXDADLWTHDSHGLLRPVFRFLEIDPKAWSGLEETAASSEAKHHIGAFLRIIFEE 122
                  D  LW H++ GLLRPVFR LEID  AW GLE+TA SS AKHHIGAF R++ EE
Sbjct: 63  -------DPSLWVHETSGLLRPVFRCLEIDSPAWLGLEQTACSSPAKHHIGAFTRLLSEE 115

Query: 123 DGESSSDRSVQELALAKGVDVMVMSLG----------NDSEVGNTIKGGDQDALPSSSGT 172
             ++S++   QE+ALAK  D MV S+              E  N  +  ++ A+P     
Sbjct: 116 ANDASAEMVEQEMALAKAADAMVHSIQCSVSIDAKKEKHQEYENECR--EKYAVPEVKSK 173

Query: 173 D---------KSPGES---------------SHDDQLGINKLTLDDIPANNH-RKMALLF 207
           D         K   ES               SH  ++  N+ +++++   +H RK+ +L+
Sbjct: 174 DVDLDKEKDKKEAAESAAREGLEAGVVIIDGSHKPEVLENEKSVEEVTLLSHQRKINVLY 233

Query: 208 ALLSACVADKPVSQEEEDRKSTRFRKGYDARHRVALRLLSTWLDVKWIKMEAIEVMVACS 267
            LLSAC++DK      ED+K  R RKGYDARHRVALRLL+TW +++WIK+EAIE MVACS
Sbjct: 234 ELLSACLSDK----HHEDKKCKRCRKGYDARHRVALRLLATWFNIEWIKVEAIETMVACS 289

Query: 268 AMAAAKEQE-QSQESASPKSKWEKWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
           AMA  K  E + +++ +P + W KWKR                                 
Sbjct: 290 AMAIQKSAEMKGEDNLTPTTSWAKWKRGGIIGAAAITGGTLMAITGGLAAPAIAAGFGAL 349

Query: 327 XXTLGTLVPVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMARRIGSVKEFEF 386
             TLGT++PVI                                   KMARRIG + EFEF
Sbjct: 350 APTLGTIIPVIGAGGFAAAASAAGTVAGSVAVAASFGAAGAGLTGTKMARRIGDLDEFEF 409

Query: 387 KPIGENHNQGRLAVGILISGFAFDEDDFCRPWEGWQDNLERYILQWESKHIIAVSTAIQD 446
           K IGENHNQGRLAV +L++G  F+E+DF +PWEG   NLERY LQWESK++I VSTAIQD
Sbjct: 410 KAIGENHNQGRLAVEVLVAGVVFEEEDFVKPWEGLTSNLERYTLQWESKNLILVSTAIQD 469

Query: 447 WLTSRLAMELMKQGAMRTVLSGXXXXXXXXXXXXXXTDFIDSKWSVAIDRSDKAGKMLAE 506
           WLTSRLAMELMKQGAM TVL+                DFIDSKWS+AIDRSDKAG++LAE
Sbjct: 470 WLTSRLAMELMKQGAMHTVLASLLMALAWPATILVAADFIDSKWSIAIDRSDKAGRLLAE 529

Query: 507 VLLKGLQGNRPVTLIGFSLGARVIFKCLQELALSSDNEGLVERVVLLGAPVSVKGERWEA 566
           VL KGLQGNRP+TL+GFSLGARVIFKCLQ LA +  N  LVERVVLLGAP+S+  E W  
Sbjct: 530 VLQKGLQGNRPITLVGFSLGARVIFKCLQALAETEQNAELVERVVLLGAPISINSENWRD 589

Query: 567 ARKMVAGRFVNVYSTDDWILGVTFRASLLTQGLAGIQAIDVPGVENVDVTELVDGHSSYL 626
            RKMVAGRF+NVY+T+DW LG+ FRASL++QGLAGIQ I +PG+ENVDVT++V+GHSSYL
Sbjct: 590 VRKMVAGRFINVYATNDWTLGIAFRASLISQGLAGIQPICIPGIENVDVTDMVEGHSSYL 649

Query: 627 SAAQQILEHLELNTYYPVF 645
              QQILE LE++TYYPVF
Sbjct: 650 WKTQQILERLEIDTYYPVF 668



>AT2G18100.1 | chr2:7867929-7871337 FORWARD LENGTH=657
          Length = 656

 Score =  569 bits (1467), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 324/669 (48%), Positives = 399/669 (59%), Gaps = 48/669 (7%)

Query: 3   TTLTPTQRYXXXXXXXXXXRQAQIHQSVLLGAXXXXXXXXEEQGRXXXXXXXXXXXXXXX 62
           + LTP+QRY           QAQI QS  LG                             
Sbjct: 6   SNLTPSQRYAASALFAIALNQAQISQSKPLG----------------IPATGSTGEPISS 49

Query: 63  XXXXXXXDADLWTHDSHGLLRPVFRFLEIDPKAWSGLEETAASSEAKHHIGAFLRIIFEE 122
                  +ADLW H+  GLLRPV R L+ID  AW GLEE AAS++AK HIGAF++++ E+
Sbjct: 50  DSDPISDEADLWVHEVSGLLRPVLRCLQIDSSAWHGLEEIAASTQAKDHIGAFIKLLSED 109

Query: 123 DGESSSDRSV---QELALAKGVDVMVMSLGNDS-----------EVGNTIKGGDQDALP- 167
             +   D S    +E ALAK  D M  ++ + S           E  N  +  D+ ++P 
Sbjct: 110 VSDDDDDSSEMVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECR--DKYSVPE 167

Query: 168 SSSGTD----KSPGESSHDD---QLGI--NKLTLDDIPANNH-RKMALLFALLSACVADK 217
           + SG +    +S GE    D    LGI  ++  + ++   +H RK+ +L+ LLSAC+ADK
Sbjct: 168 AQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADK 227

Query: 218 PVSQEEEDRKSTRFRKGYDARHRVALRLLSTWLDVKWIKMEAIEVMVACSAMAAAKEQ-E 276
                EE+   TR RKGYDARH VALRLL+TW D +WIKMEA+E M ACSAMA  K    
Sbjct: 228 ----HEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGN 283

Query: 277 QSQESASPKSKWEKWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGTLVPV 336
           + +ES SP S+W KWKR                                   TLGT+VPV
Sbjct: 284 KEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPV 343

Query: 337 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMARRIGSVKEFEFKPIGENHNQG 396
           I                                   KMARR G ++EFEFK IGENHNQG
Sbjct: 344 IGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQG 403

Query: 397 RLAVGILISGFAFDEDDFCRPWEGWQDNLERYILQWESKHIIAVSTAIQDWLTSRLAMEL 456
           RLAV IL++GF   E+DF +PWEG   NLERY +QWES++IIAVSTAIQDWLTSR+AMEL
Sbjct: 404 RLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMEL 463

Query: 457 MKQGAMRTVLSGXXXXXXXXXXXXXXTDFIDSKWSVAIDRSDKAGKMLAEVLLKGLQGNR 516
           M+QGAMRTVL+                DFIDS+WS+AIDRSDKAGK+LAE L KGLQGNR
Sbjct: 464 MRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDRSDKAGKLLAEALRKGLQGNR 523

Query: 517 PVTLIGFSLGARVIFKCLQELALSSDNEGLVERVVLLGAPVSVKGERWEAARKMVAGRFV 576
           PVTL+GFSLGARV+FKCLQ LA +  N  +VERVVLLGAP+S+K E W   RKMVAGRF+
Sbjct: 524 PVTLVGFSLGARVVFKCLQTLAETEKNAEIVERVVLLGAPISIKNENWRDVRKMVAGRFI 583

Query: 577 NVYSTDDWILGVTFRASLLTQGLAGIQAIDVPGVENVDVTELVDGHSSYLSAAQQILEHL 636
           NVY+T+DW LGV FRASLL+QGLAGIQ + +PG+E+VDVT++V+GHSSYL   QQILE L
Sbjct: 584 NVYATNDWTLGVAFRASLLSQGLAGIQPVCIPGIEDVDVTDMVEGHSSYLWKTQQILERL 643

Query: 637 ELNTYYPVF 645
           EL+  YPVF
Sbjct: 644 ELDNSYPVF 652



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,329,811
Number of extensions: 420596
Number of successful extensions: 1165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 3
Length of query: 661
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,227,889
Effective search space: 4574706284
Effective search space used: 4574706284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)