BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0108000 Os03g0108000|AK102520
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03455.1  | chr5:862592-863949 FORWARD LENGTH=147              192   8e-50

>AT5G03455.1 | chr5:862592-863949 FORWARD LENGTH=147
          Length = 146

 Score =  192 bits (487), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 107/138 (77%)

Query: 9   LTRPAAAAMARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGER 68
            T+    AMAR +SY+++ QL+P+ R P IA++DVRDEER YD HIAGS HYAS SF ++
Sbjct: 9   FTKKKKMAMARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK 68

Query: 69  LPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWEL 128
           +  L Q  K K+TLVFHCALS+VRGP+CA+  ++YL E  ED+ +KNIM+LERGFNGWE 
Sbjct: 69  ISHLVQNVKDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEA 128

Query: 129 SGRPVCRCKDAPCKGVCS 146
           SG+PVCRC + PCKG C+
Sbjct: 129 SGKPVCRCAEVPCKGDCA 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,151,627
Number of extensions: 118624
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)