BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0107300 Os03g0107300|AK101092
(472 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503 491 e-139
>AT1G02260.1 | chr1:440757-442459 REVERSE LENGTH=503
Length = 502
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 267/503 (53%), Positives = 330/503 (65%), Gaps = 39/503 (7%)
Query: 4 LASAP--KVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSAVLMVIFHVISPDDAYAS 61
+A AP K+ LGS+AFA+FW++AVFPSVPFLPIGRTAGSL A+LMVIF VI+P+ AYA+
Sbjct: 1 MAMAPVIKLVLGSVAFAIFWILAVFPSVPFLPIGRTAGSLFGAMLMVIFQVITPEQAYAA 60
Query: 62 IDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRDLMCRVCVVTALASALFTND 121
IDLPILGLLF TMVV YL A MFK+LG LL+WKS+G +DL+CRVC+V+A++SALFTND
Sbjct: 61 IDLPILGLLFGTMVVSIYLERADMFKYLGTLLSWKSRGPKDLLCRVCLVSAVSSALFTND 120
Query: 122 TCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAATPIGNPQNLVIAFNSKITFPKF 181
T CVVLTEFVL++A ++NLP PFLLALA+SANIGS+ATPIGNPQNLVIA SKI F +F
Sbjct: 121 TSCVVLTEFVLKIARQKNLPPHPFLLALATSANIGSSATPIGNPQNLVIAVQSKIPFWEF 180
Query: 182 LMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDGK---------------------- 219
L+G+ PAM+VG+ VN ++LL MYWR L E + +
Sbjct: 181 LLGVFPAMIVGITVNAMLLLGMYWRLLSDHKEDEEEVQNADSEVVAQEDVQSHRFSPATF 240
Query: 220 ----------QMEAVEEGRSPASAKSTPQL---NGNGNTMMSLEMSENITTKHPWFMQCT 266
+M+A E R+ A + +L N N + + + + M T
Sbjct: 241 SPVSSEDSNLRMDAAETLRNRAGSAGESELISCNSNASREQHNDAESQGESNNTNNMFQT 300
Query: 267 EARRKLFLKSFXXXXXXXXXXXXXXXLNMSWTAITTALALVVVDFRDAEPCLDTVSYSLL 326
+ R++ KS LNMSWTAIT ALALVV+DF+DA P L+ VSYSLL
Sbjct: 301 KRWRRVLWKSSVYFITLGMLISLLMGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLL 360
Query: 327 VFFSGMFITVSGFNKTGLPGAIWDFMAPYSKXXXXXXXXXXXXXXXXXXXXXXXXPTVLL 386
+FF GMFITV GFNKTG+P A+WD M PY+K PTVLL
Sbjct: 361 IFFCGMFITVDGFNKTGIPTALWDLMEPYAKIDQAKGIAVLAVVILVLSNVASNVPTVLL 420
Query: 387 MGDEVAKAAALISPAAVTTSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLT 446
+G VA +A + +WLLLAWVSTVAGNL+LLGSAANLIVCEQARRA + Y LT
Sbjct: 421 LGARVAASA--MGREEEKKAWLLLAWVSTVAGNLTLLGSAANLIVCEQARRAVSHGYTLT 478
Query: 447 FWQHIVFGVPSTLIVTAVGIPLI 469
F +H FG+PSTLIVTA+G+ LI
Sbjct: 479 FTKHFKFGLPSTLIVTAIGLFLI 501
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,629,280
Number of extensions: 312931
Number of successful extensions: 1009
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1007
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)