BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0833600 Os02g0833600|AK061086
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35900.1 | chr4:17004746-17005952 FORWARD LENGTH=286 67 3e-12
AT2G17770.2 | chr2:7723103-7723951 FORWARD LENGTH=196 54 4e-08
AT2G41070.1 | chr2:17131249-17132208 FORWARD LENGTH=263 53 5e-08
AT3G56850.1 | chr3:21046554-21047894 REVERSE LENGTH=298 52 8e-08
AT1G49720.2 | chr1:18400826-18402362 FORWARD LENGTH=404 52 1e-07
AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443 50 3e-07
AT3G19290.3 | chr3:6687956-6689784 FORWARD LENGTH=433 48 2e-06
AT4G34000.1 | chr4:16296008-16297971 FORWARD LENGTH=455 48 2e-06
>AT4G35900.1 | chr4:17004746-17005952 FORWARD LENGTH=286
Length = 285
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALIQQPT 130
R+ RM+KNRESA RSRARK+AY ELE EV L EN +LKR QLK MAA IQQP
Sbjct: 216 RRHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQQDQLK--MAAAIQQP- 272
Query: 131 NKQSSHRRSSS 141
K+++ +RSS+
Sbjct: 273 -KKNTLQRSST 282
>AT2G17770.2 | chr2:7723103-7723951 FORWARD LENGTH=196
Length = 195
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLK 119
R+ RM+KNRESA RSRARK+AY ELE E+ L EN +LK +QLK
Sbjct: 126 RRYKRMIKNRESAARSRARKQAYTNELELEIAHLQTENARLKIQQEQLK 174
>AT2G41070.1 | chr2:17131249-17132208 FORWARD LENGTH=263
Length = 262
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALIQQPT 130
R+ RM+KNRESA RSRARK+AY ELE +V RL EN KL+R K+++ + + + P
Sbjct: 192 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLRR-LKEVEKILPS--EPPP 248
Query: 131 NKQSSHRRSSS 141
+ + RR++S
Sbjct: 249 DPKWKLRRTNS 259
>AT3G56850.1 | chr3:21046554-21047894 REVERSE LENGTH=298
Length = 297
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALIQQPT 130
R+ RM+KNRESA RSRARK+AY ELE +V RL EN +L+ KQ + E P
Sbjct: 227 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLR---KQKEVEKILPSVPPP 283
Query: 131 NKQSSHRRSSS 141
+ + RR+SS
Sbjct: 284 DPKRQLRRTSS 294
>AT1G49720.2 | chr1:18400826-18402362 FORWARD LENGTH=404
Length = 403
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVR--RLVNENLKLKRHCKQLKTEMAALI 126
R+ RM+KNRESA RSRARK+AY ELE E+ +LVN++L+ K+ + +KT + +I
Sbjct: 313 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQ-KKQAEIMKTHNSEVI 369
>AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443
Length = 442
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLK 119
R+ RM+KNRESA RSRARK+AY ELE E+ +L EN +LK +L+
Sbjct: 357 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELE 405
>AT3G19290.3 | chr3:6687956-6689784 FORWARD LENGTH=433
Length = 432
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALIQQPT 130
R+ RM+KNRESA RSRARK+AY ELE E+ KLK+ ++L+ + A +++
Sbjct: 353 RRQRRMIKNRESAARSRARKQAYTLELEAEIE-------KLKKTNQELQKKQAEMVEMQK 405
Query: 131 NKQ 133
N+Q
Sbjct: 406 NEQ 408
>AT4G34000.1 | chr4:16296008-16297971 FORWARD LENGTH=455
Length = 454
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 71 RKTIRMMKNRESALRSRARKRAYVQELEKEVRRL--VNENLKLKR 113
R+ RM+KNRESA RSRARK+AY ELE E+ +L +NE L+ K+
Sbjct: 374 RRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQ 418
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,894,995
Number of extensions: 50093
Number of successful extensions: 367
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 10
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)