BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0833100 Os02g0833100|AK066423
(106 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38380.1 | chr4:17971855-17974787 REVERSE LENGTH=561 80 2e-16
AT2G38330.1 | chr2:16064571-16067318 FORWARD LENGTH=522 67 1e-12
AT3G08040.1 | chr3:2566593-2569397 REVERSE LENGTH=527 57 1e-09
AT1G51340.2 | chr1:19032021-19034681 FORWARD LENGTH=516 57 2e-09
>AT4G38380.1 | chr4:17971855-17974787 REVERSE LENGTH=561
Length = 560
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 5 FLKCLGGMLLGRTLSILLTMTIGTSMAARQGPTAMAAHQICLQVWXXXXXXXXXXXXXXX 64
+LK GG +LGRTLS+L+TMT+ TSMAARQG AMAAHQIC+QVW
Sbjct: 347 YLKS-GGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASSGQ 405
Query: 65 XMIASSYAILDYKRVQKIAMFALQV 89
+IASS + D++ V+++ F L++
Sbjct: 406 ALIASSASKRDFEGVKEVTTFVLKI 430
>AT2G38330.1 | chr2:16064571-16067318 FORWARD LENGTH=522
Length = 521
Score = 67.4 bits (163), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 10 GGMLLGRTLSILLTMTIGTSMAARQGPTAMAAHQICLQVWXXXXXXXXXXXXXXXXMIAS 69
GG+L+GRT+++L+ T+ TS+AA+ GPT MA HQI L++W ++A+
Sbjct: 312 GGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEIWLAVSLLTDALAIAAQSLLAT 371
Query: 70 SYAILDYKRVQKIAMFALQV 89
+Y+ +YK+ +++ LQV
Sbjct: 372 TYSQGEYKQAREVLFGVLQV 391
>AT3G08040.1 | chr3:2566593-2569397 REVERSE LENGTH=527
Length = 526
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 5 FLKCLGGMLLGRTLSILLTMTIGTSMAARQGPTAMAAHQICLQVWXXXXXXXXXXXXXXX 64
FLK G +LL RT+++ T+ +MAAR G T MAA QICLQVW
Sbjct: 312 FLKN-GLLLLARTIAVTFCQTLAAAMAARLGTTPMAAFQICLQVWLTSSLLNDGLAVAGQ 370
Query: 65 XMIASSYAILDYKRVQKIAMFALQ----VMCHFSVFYCEALFF 103
++A S+A DY +V +A LQ + SVF L+F
Sbjct: 371 AILACSFAEKDYNKVTAVASRVLQMGFVLGLGLSVFVGLGLYF 413
>AT1G51340.2 | chr1:19032021-19034681 FORWARD LENGTH=516
Length = 515
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 10 GGMLLGRTLSILLTMTIGTSMAARQGPTAMAAHQICLQVWXXXXXXXXXXXXXXXXMIAS 69
G +LL R +++ +T+ S+AAR+G T+MAA Q+CLQVW ++AS
Sbjct: 312 GFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILAS 371
Query: 70 SYAILDYKRVQKIAMFALQV 89
++A DYKR A LQ+
Sbjct: 372 AFAKKDYKRAAATASRVLQL 391
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.337 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,536,318
Number of extensions: 33102
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 4
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 105 (45.1 bits)