BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0832600 Os02g0832600|AK058645
         (351 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19900.1  | chr5:6728561-6730045 REVERSE LENGTH=495            243   1e-64

>AT5G19900.1 | chr5:6728561-6730045 REVERSE LENGTH=495
          Length = 494

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/219 (57%), Positives = 145/219 (66%), Gaps = 14/219 (6%)

Query: 42  TAAGGYQPPALGDLQVQNRAKARRWFKNQSXXXXXXXXPRKHFFPRPKAAAPRNTTSFII 101
             AGGY+PP L +LQ QNR K R+++            P+K +  R    APRNTTSFII
Sbjct: 147 VGAGGYKPPTLNELQSQNRLKTRKFY------------PKKKYGNRYVPYAPRNTTSFII 194

Query: 102 RAKRAGGIASLVSPSPVTPAVLPTPRLSPSREGLSDMAQAQWGVDGYGSMKGLIRLRTSP 161
           RAK++GGIA LVSP PVTPAVLPTP  SPSRE L DMA+ +WGVDGYGSMKGLIRLR   
Sbjct: 195 RAKKSGGIAELVSPCPVTPAVLPTPMFSPSREVLGDMAKEEWGVDGYGSMKGLIRLRADG 254

Query: 162 HXXX--XXXXXXXXXXXXXXVEEHVEVERRLDHDLSRFEMVYPARGDGVFFXXXXXXXXX 219
           +                   VEEHVEVERRLDHDLSRFEM+YP  G   +          
Sbjct: 255 NELEPYEEDDEDEGGSSESDVEEHVEVERRLDHDLSRFEMIYPNYGGSEYNNVLENRVDD 314

Query: 220 XXAHVARLEEENLTLKERLFLMEQELGDMRRRLEALESR 258
             +H+A+LEEENLTLKERLFLME+ELGDMRRRL+ LE R
Sbjct: 315 QDSHIAQLEEENLTLKERLFLMERELGDMRRRLQYLERR 353



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,140,473
Number of extensions: 224363
Number of successful extensions: 690
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)