BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0830900 Os02g0830900|AK060482
         (348 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15680.1  | chr5:5101188-5110793 REVERSE LENGTH=2154           411   e-115

>AT5G15680.1 | chr5:5101188-5110793 REVERSE LENGTH=2154
          Length = 2153

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/355 (61%), Positives = 262/355 (73%), Gaps = 24/355 (6%)

Query: 1    MPRDEFDINGYTSDLHRLESRTTSERLLSVTETGKVPDFEGVQPLVLKGLMSSVSHGSAI 60
            MPRDEF+ N    +  R ESR           +G +P FEGVQPLVLKGLMS+VSH  +I
Sbjct: 1814 MPRDEFNTND-LGEFQRSESRGYE----MPPSSGTLPKFEGVQPLVLKGLMSTVSHEFSI 1868

Query: 61   EVLSRITIPTCDSIFGSPETRLLMHITGLLPWLGLQLTKDASSLGSSSPIQEQNQKAYYV 120
            EVLSRIT+P+CDSIFG  ETRLLMHITGLLPWL LQLT+D   + S+ P+Q+Q QKA  V
Sbjct: 1869 EVLSRITVPSCDSIFGDAETRLLMHITGLLPWLCLQLTQD-QVMVSALPLQQQYQKACSV 1927

Query: 121  ASNISVWCRVKSLDDLAEVFRAYSFGEIISLEDLFARASPPICSEWFPKHSSLAFGHLLR 180
            ASNI+VWCR KSLD+LA VF AY+ GEI  +E+L A  SP +C++WFPKHS+LAFGHLLR
Sbjct: 1928 ASNIAVWCRAKSLDELATVFVAYARGEIKRVENLLACVSPLLCNKWFPKHSALAFGHLLR 1987

Query: 181  LLERGPLDYQRVVLLMLKSLLQQTPVDPSQIPQVYNVVSQLVESALCAEALNVLEALLRS 240
            LL++GP+DYQRV+LLMLK+LLQ TP+D SQ P +Y +VSQLVES LC EAL+VLEALL+S
Sbjct: 1988 LLKKGPVDYQRVILLMLKALLQHTPMDASQSPHMYTIVSQLVESTLCWEALSVLEALLQS 2047

Query: 241  CSGVTGGQG----DDIGFGENGHGMGEKVHQSMLLPQSSFKARSGPLQYAAAGSGFGTLM 296
            CS V GG G     D  + ENG        +  L+PQ+SFKARSGPLQYA   +     M
Sbjct: 2048 CSPVQGGTGGSHPQDSSYSENG------TDEKTLVPQTSFKARSGPLQYAMMAAT----M 2097

Query: 297  GQG---GGSAADTGVATRDVALQNTRLLLGRVLDTCALGRKRDHKRLVPFVANIG 348
             Q    G +AA++G+  RDVALQNTRL+LGRVLD CALGR RD++RLVPFV  I 
Sbjct: 2098 SQPFPLGAAAAESGIPPRDVALQNTRLMLGRVLDNCALGR-RDYRRLVPFVTTIA 2151



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,459,829
Number of extensions: 310453
Number of successful extensions: 1001
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)