BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0828100 Os02g0828100|AK070854
(355 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73390.1 | chr1:27591079-27594148 REVERSE LENGTH=420 481 e-136
AT1G17940.1 | chr1:6169621-6172035 REVERSE LENGTH=406 459 e-130
AT5G14020.1 | chr5:4523730-4525819 REVERSE LENGTH=402 220 9e-58
>AT1G73390.1 | chr1:27591079-27594148 REVERSE LENGTH=420
Length = 419
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/353 (64%), Positives = 284/353 (80%), Gaps = 5/353 (1%)
Query: 1 MGCFNSKPNDTGAIRRRPGSIGEVAVFVPGLRVPESSDELPLQPLGDGLPRRLTERLAAL 60
MGCF S+PNDTG RR+P SIG+V+V+VPGLR+P+ + Q LGD LP+ L ERL AL
Sbjct: 1 MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFS--QSLGDQLPKTLVERLTAL 58
Query: 61 RNRIIVMAAHEALYMTKPTWRITITQHGGSKSADLLQALEDYLPTLLGLVKDGSELEDKV 120
R RI+VMA E +T+ + TQHGGS ADL ALEDY+P LLGL KDGS L+ KV
Sbjct: 59 RTRIVVMANQEGPTITRTRRK---TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKV 115
Query: 121 QFAWMNQEDDAEDTSMPSAWYEVLSVLHLMALLRLSQANSLLVPKTSIEGYHAKVSEENK 180
QF W+NQED+ E+T+M + WYE+LSVLHLMA+L++SQAN LL+P+ S +GYH K+SEEN+
Sbjct: 116 QFNWVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENR 175
Query: 181 RASVEIFLKAAGYLECAIQHVLPKISPEKRKGLPVDLAEGILKAICMQALGQAIDVQLGL 240
RAS++IFLKAAGYL+CA++HVLP S E+R+ LP+DLAEG L+A+C+QALGQ +D+QLG+
Sbjct: 176 RASIDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGM 235
Query: 241 AIDSPKATLAVKRRLACEMVKCWQQAHESISDLPLLDGWAEKHRLFVTWKHIEAKAAAYY 300
AIDS KATLAVKRRL+CEMVK WQQA +++ +LPL +GW EKH LFV WK++EAKAAAYY
Sbjct: 236 AIDSAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYY 295
Query: 301 YHGLILDEGNSEKSHRTAVAALQSAEELLKESKAACEAFHAASPVSRQARRCG 353
YHGLILDEGN+EKSH AVAALQ+A+E LKESK A EAF+ +SP SR G
Sbjct: 296 YHGLILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFG 348
>AT1G17940.1 | chr1:6169621-6172035 REVERSE LENGTH=406
Length = 405
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/348 (65%), Positives = 280/348 (80%), Gaps = 6/348 (1%)
Query: 1 MGCFNSKPNDTGAIRRRPGSIGEVAVFVPGLRVPESSDELPLQPLGDGLPRRLTERLAAL 60
MGCF S P D+G RR+P SIGEV+V+VPGLR+P + D L Q LGD LP+ L ERL AL
Sbjct: 1 MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFL--QSLGDQLPKTLVERLTAL 58
Query: 61 RNRIIVMAAHEALYMTKPTWRITITQHGGSKSADLLQALEDYLPTLLGLVKDGSELEDKV 120
R RI+VMA E +T+ + TQHGGS DL QAL DYLP +LGL KDGS L+ KV
Sbjct: 59 RTRIVVMANQEGPTITRTRRK---TQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKV 115
Query: 121 QFAWMNQEDDAEDTSMPSAWYEVLSVLHLMALLRLSQANSLLVPKTSIEGY-HAKVSEEN 179
QF W+NQED+ E+T M + WYEVLSVLHLMA+L++SQAN LL+P+ S +G+ H KVSEEN
Sbjct: 116 QFNWVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEEN 175
Query: 180 KRASVEIFLKAAGYLECAIQHVLPKISPEKRKGLPVDLAEGILKAICMQALGQAIDVQLG 239
+R S++IFLKAAGYL+CA++HVLP+ S E+R+ LPVDLAEG L+A+C+QALGQ +D+QLG
Sbjct: 176 RRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLG 235
Query: 240 LAIDSPKATLAVKRRLACEMVKCWQQAHESISDLPLLDGWAEKHRLFVTWKHIEAKAAAY 299
+AIDS KATLAVKRRL+CEMVK WQQA +++ +LPL +GW EKH LFV WK++EAKAAAY
Sbjct: 236 MAIDSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAY 295
Query: 300 YYHGLILDEGNSEKSHRTAVAALQSAEELLKESKAACEAFHAASPVSR 347
YYHGLILDEGN+EKSH AVAALQ+A+E KESK A EAF+A++P SR
Sbjct: 296 YYHGLILDEGNTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSR 343
>AT5G14020.1 | chr5:4523730-4525819 REVERSE LENGTH=402
Length = 401
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 202/355 (56%), Gaps = 28/355 (7%)
Query: 1 MGCFNSKPNDTGAIRRRPGSIGEVAVFVPGLRVPESSDELPLQPLGDGL-PRRLTERLAA 59
MGC S G + + I E VFV RVP SD LQ G+ P+ RL
Sbjct: 1 MGCAQSTIAVVGR-KNKKRIIQESVVFVLQFRVPVQSD---LQRQLKGVSPKTTINRLTC 56
Query: 60 LRNRIIVMAAHEALYMTKPTWRITITQHGGSKSADLLQALEDYLPTLLGLVKDGSE-LED 118
LRN+I ++A GGS ++L ALE+YL L GL+K + +E
Sbjct: 57 LRNQIELVAEDT----------------GGSAISELRTALEEYLSLLSGLIKKSKDGMEG 100
Query: 119 KVQFAWMNQEDDAE-DTSMPSAWYEVLSVLHLMALLRLSQANSLLVPK---TSIEGYHAK 174
V+ W D + + W E+L V+H+MA L L++ANSL++PK S G +
Sbjct: 101 CVELKWRTLGDGRRAEICCTNLWMEMLIVIHMMAALALTEANSLMIPKDCYASGSGNGVR 160
Query: 175 V-SEENKRASVEIFLKAAGYLECAIQHVLPKISPEKRKGLPVDLAEGILKAICMQALGQA 233
V S + +R +V++ LKA+GYLE ++ +L ++ + + LP D+ E +L+ + +QALGQ
Sbjct: 161 VVSTDCRRDAVDLLLKASGYLEFCVREILTQLPHDIKSKLPDDMQESVLQTLSIQALGQG 220
Query: 234 IDVQLGLAIDSPKATLAVKRRLACEMVKCWQQAHESISDLPLLD-GWAEKHRLFVTWKHI 292
++QLGLA+DS KATL+VKRR+ACE V + QA+ +S + G A+K F+ WK +
Sbjct: 221 TEIQLGLAVDSQKATLSVKRRIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFL 280
Query: 293 EAKAAAYYYHGLILDEGNSEKSHRTAVAALQSAEELLKESKAACEAFHAASPVSR 347
EAKAAAYYYHGL+ D+G+ H +AV +A E+L ESK AC +F A PV+R
Sbjct: 281 EAKAAAYYYHGLVTDKGSEPACHLSAVCCFLAAAEILGESKKACLSFCLAPPVTR 335
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,563,987
Number of extensions: 301310
Number of successful extensions: 748
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 3
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)